Mbra007737.1
Basic Information
- Insect
- Microctonus brassicae
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_940306215.1
- Location
- OW675805.1:6884494-6886831[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.6e-115 1.3e-110 369.5 33.2 1 300 29 328 29 328 0.96 2 3 0.0065 1.3e+02 1.8 3.7 122 172 328 378 326 385 0.89 3 3 0.047 9.3e+02 -1.0 5.7 134 230 361 394 339 403 0.44
Sequence Information
- Coding Sequence
- atggaatcaACAGTAGCTGGACGAAGACGTGTCGCGACAAGACACTCAGCTGAGGATCAAGCTCTTGATCAAATTGCAAAAGAGgCGGAGGCAAGACTTGCTGCAAGACGTCAAGCACGAGCTGAGGCTAGAGAAATTCGTATGAGAGAATTGGAGAGACAACAGAAAGAAGCTGAAGAGAATGCTGATAGAGTTTATGATATGTGTACATCTGATGGTACTAGAAATATGAGGGTGACACCGGATCCAGTGAGAACTTCTCGTTTATTGAcaaattctaataattttcaatcaagTCGTAGGTCTTCCGAAGATTCATTAGAGGATGCTGGTTTAAGTAGAGATATTAGatTAGAGCTTAAGGAGTTTGAGGAAAAATTTAGAAAAGCAATGATTGCTAATGCTCAACTtgacaatgaaaaatcatcaTACGCTTATCAAGTGGATTtattaaaagataaattgGAGGAATTGGAGGAATCATCGGCGACATTGCGACGAGAACTCAGGGAAAAAAATCGTGAGGCTGATCAATTAAAACGTATAAGTGATCGGTTGAAAGACGAAGTGGAATTATACAAAGGACAATTATTAGAACGAGATACACTtatacaaGAAAATGGATTGGTAATTGTTGAGGATGAGGGAAGTGAAAATGAGGAGACAACAACAGGAACAGCTAATGGAATTATTCCTAGAAAGAGAGTACTAGTCAGTACAGAGGCTGcagaattattacaaaatgcTGGTGAAGGATCGTTAGATGTTCGATTGAGAAAATTTGCatcggaaaaaaaagaattgcaGGATGAAATACGACATTTAACATTAGAATTGGAAGAGGCAAAAAGTCGTATAAGATCTGAGAGATCGTCAGGATCAGTATTAGGGTTAGCCGACTCTGAGGATGTTCAAAGAGaggcaaataaattattggctgattataaattcaaattacaaaAAACCGAGCAAGATTTGTCAACGTTACAAGCAACTGTTGCAAGATTAGAGAGTCAAGTTATTCGTTATAAATCTGCGGCAGAAGCGTCAGAGAAAGCTGAAGATGAATTAAAAGTTGAGAAACGAAAATTGCAAAGAGAAgttagggAATCACAAAGTCGTGTTGAGGAATTAGAGACAGCGAATTCTCATCTTCAAAGACGtatggataaattaaaaaatgccAAGTCGGCTTTATTAAAAGAACTTTGA
- Protein Sequence
- MESTVAGRRRVATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTSDGTRNMRVTPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLSRDIRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEESSATLRRELREKNREADQLKRISDRLKDEVELYKGQLLERDTLIQENGLVIVEDEGSENEETTTGTANGIIPRKRVLVSTEAAELLQNAGEGSLDVRLRKFASEKKELQDEIRHLTLELEEAKSRIRSERSSGSVLGLADSEDVQREANKLLADYKFKLQKTEQDLSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQSRVEELETANSHLQRRMDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00687172;
- 80% Identity
- iTF_01000545;