Mcol003081.1
Basic Information
- Insect
- Meteorus colon
- Gene Symbol
- -
- Assembly
- GCA_030523125.1
- Location
- JAPYZG010000285.1:10175-12975[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3e-12 2.7e-09 36.6 0.0 1 39 280 319 280 323 0.90 2 4 3.5e-12 3.1e-09 36.4 0.1 2 39 335 372 334 375 0.94 3 4 1.3e-18 1.1e-15 57.0 0.0 2 45 390 434 389 434 0.97 4 4 1.5e-18 1.3e-15 56.8 0.1 1 42 441 483 441 484 0.97
Sequence Information
- Coding Sequence
- atgaatataaaattgaatttgTCGCTGTTGAAAACGGCGGATCAACTGAAAATTAAGGGCCTGTGTGAGGTGCCGGAGAGCAGAGAGGCACCGGCAACAGTGAGCTTGAGCTCACCTCCGCGGGAAACGGGTGCGGCAAGATTTAACTATACCAAACTGAAGAGACATCATCCAAAGTATAAACGACAGAGAACGACATTTGAGCCGAGGGCGACGAGCACAGATTCACGGCATTACGACAAATACAAAGAGGAGGATAATAACGAGGGTGGTGGTGGCTTTGGCCGTGAAAACGACAAGGAGAATCATCGGGGTGAGTGGCAGACGGAGGATGAAGAGTGCGGCGACGCAGCAGTAGTCCTGGAATCCTGCCAACGCGACAGCAACAACGGTAACGGCACAAACAACAATAACGgtgaCATGTTCTGTCACACAGGCCTAGGACATTACGGTCATCATCCAGATCCTGGGGAAGTAGATCTGCCGCCTGAGACACAACCAACGCCACCGAGTGCTACCCTTGTTGGAACGACTATTACTCATTTGAGAGATACGGATCATCACTCGTCAgatATTCAAAATTGTGACAGTGTGAAGATTAAATTCGAAACACTACACACAATGGATTCGTCAGATACAATTGACATAGACAGTCACATGTCAGATCGAGCGAGCGTGAGCTCGAAACATGGCGCGGAGGGCGACaacatgatgatgataacACCTGAATTATTGGGACTGATGCCCTCAGGGAGTTCTGTGCATTCGGATTCGGGTGATAATAATTCACGAGGCCATTCGGGTGGCTCGGGACATCATCATGGTTCCAAATCGTGGACACAAGAGGATATGGATGCAGCATTGGACGCGCTCAGAAATCATGACATGAGTTTGACAAAAGCGTCGGCGACCTTTGGAATACCATCCACAACACTTTGGCAGCGTGCACATCGATTGGGTATTGACACACCGAAAAAAGATGGACCAACGAAATCGTGGAGTGATGAGAGTTTAAATAATGCCTTGGAAGCATTACGAACTGGCACTATATCTGCCAATAAAGCTTCGAAAGCCTTTGGAATACCATCTAGCACATTGTATAAAATTGCCAGGCGAGAAGGCATTCGACTGGCAGCACCATTTAATGCAAGTCCAACTACATGGTCACCAGCTGATCTTGACAGAGCATTAGAAGCGATAAGATCGGGACAAACATCAGTGCAAAGAGCATCAACAGAGTTTGGTATTCCTACAGGAACTCTTTATGGTAGATGTAAAAGAGAAGGCATCGAATTAAGTAGGAGCAATCCAACTCCTTGGAGTGAAGATGCAATGACCGAAGCATTGGAGGCTGTCAGattggGACACATGAGTATTAATCAGGCGGCAATTCATTATAATCTACCGTACTCATCACTTTACGGACGGTTTAAACgtggaaaatatgaagaacCAGTTGTCGCAGAATTATCACAAGATGGTACAAATCcgcattttcatcaaaatcatcaGAGTCCACATCAAAATCATTCATCACCACTTCCCGATCAAATGCCGTATCAGGGTAGCTGA
- Protein Sequence
- MNIKLNLSLLKTADQLKIKGLCEVPESREAPATVSLSSPPRETGAARFNYTKLKRHHPKYKRQRTTFEPRATSTDSRHYDKYKEEDNNEGGGGFGRENDKENHRGEWQTEDEECGDAAVVLESCQRDSNNGNGTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDTDHHSSDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKHGAEGDNMMMITPELLGLMPSGSSVHSDSGDNNSRGHSGGSGHHHGSKSWTQEDMDAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVAELSQDGTNPHFHQNHQSPHQNHSSPLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_01560354;
- 80% Identity
- iTF_00996250;