Mvio032034.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060840.1:3077063-3092858[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.14 1e+02 4.9 0.1 21 43 139 161 131 172 0.87 2 10 1.2 8.9e+02 1.9 0.0 22 45 168 191 165 194 0.85 3 10 0.006 4.6 9.2 0.1 21 43 195 217 193 223 0.91 4 10 4.2 3.2e+03 0.1 0.0 23 43 225 245 222 251 0.85 5 10 1.8 1.3e+03 1.3 0.1 20 34 250 264 243 284 0.73 6 10 2.4 1.8e+03 0.9 0.1 21 43 279 301 271 305 0.73 7 10 0.77 5.9e+02 2.5 0.0 21 47 307 333 299 340 0.85 8 10 0.0067 5.1 9.1 0.0 21 46 363 388 355 396 0.84 9 10 0.16 1.2e+02 4.7 0.0 21 48 391 418 388 422 0.86 10 10 0.0048 3.7 9.6 0.6 21 43 419 441 411 446 0.90
Sequence Information
- Coding Sequence
- ATGTTGCCGTTTAACACAGATATGAAGAATGAAAGGAACAGCAATTGTGCAGGGGCTGGAGGTGAAGAACTTCAGAAGACTTCAGAATCCTGCAGCTGGGAGGAATCATGCAGATCAAATGACGAGATACATACGGCACTGCAGCCTGAGGTTGTGTTGACGATCTCAGATGACAAGCCACCAGCCTCAGCACCATTACCTAATAGAAATAGTGCTGTGCATGGGAGACGCAGGGTGTACCCACCAGGGGTGGAAATGCACAAATGCCAATATTGTCCGAAAGAGTTTGCAAACATTGCCACATTCAAGAAGCATTGTTTGATACATACTGGAAGAAAACCACGGGTGTGTGAGGTGTGCGGTAAGGCTTTTGCAGACACCAGTTACCTCAAGGTTCATGCACAGATCCACCGTGGGGAGAAGCCACATGTTTGTAGCATCTGTGGTAGAGCATTCACTCAAGTTGGAGATTTAAGAATACACTCACTGATCCATACAGGAGAGAAGCGGCATGTGTGTGATATCTGTGGTAAGGCATTCACACATTCTAACACCCTACGTGAGCATACGCTGCTTCATACAGGGGAGAAGCCCCACATATGCACAGTGTGCGGAAAGGGTTTTGCCAAGTCATGCAATTTGAGAAGACATTCTCTAACACATGGAGGGATTAGACCTCATGTGTGTCAAGTGTGTGGTAAAGGATTTATACAGTCAGGAGACCTTAAGACACATTCGCTAAAGCACAAAGGGGAGAGACCGCATGCCTGCAACATCTGCGGTAAAGCTTTCTCATTAGCAAGTATTCTTAAGACACATTCACTGATCCACAGTGGGGAGAAGCCGcatgtgtgtggtgtgtgtgggAAGGCATTTCTACGTGCCTGTCGTCTTAAGAAACACAACATGATTCATACAGGAGAGCGTCCTTACGTTTGTTCAGTGTGTGGCAAGGCATTCAAAGTGTCTAGTGTACTGAAAGCTCACATTTATGTACACACAGGAGAGAAGCCATACTCGTGTGGGGAGTGCGGCAAGTCATTCTCAGACTCTGGTTATCTCCGAATACACTCGCTGATACACAAGGGAGAAAAGCCACATgtttgtgaagtttgtgggaggGCATTCGTGCAGTCCTCAGATCTGAAGCGACATTCCCTGGTGCACACTGGTGAAAAACCTTATGTTTGTAGTATCTGTAGCAAAGCTTTTTCATTGTCTAGCACTCTGAAGACTCACATGAGAATACACACTGGGGAGAAGCCCCACATTTGCAAAATTTGTTGCAGGGCATTCACACTTTCACGGGATCTCAGAAAACATTCGCTTAcccataatgaaatattaatcgcTTCAGCTAGTGACTGA
- Protein Sequence
- MLPFNTDMKNERNSNCAGAGGEELQKTSESCSWEESCRSNDEIHTALQPEVVLTISDDKPPASAPLPNRNSAVHGRRRVYPPGVEMHKCQYCPKEFANIATFKKHCLIHTGRKPRVCEVCGKAFADTSYLKVHAQIHRGEKPHVCSICGRAFTQVGDLRIHSLIHTGEKRHVCDICGKAFTHSNTLREHTLLHTGEKPHICTVCGKGFAKSCNLRRHSLTHGGIRPHVCQVCGKGFIQSGDLKTHSLKHKGERPHACNICGKAFSLASILKTHSLIHSGEKPHVCGVCGKAFLRACRLKKHNMIHTGERPYVCSVCGKAFKVSSVLKAHIYVHTGEKPYSCGECGKSFSDSGYLRIHSLIHKGEKPHVCEVCGRAFVQSSDLKRHSLVHTGEKPYVCSICSKAFSLSSTLKTHMRIHTGEKPHICKICCRAFTLSRDLRKHSLTHNEILIASASD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00955776;
- 90% Identity
- iTF_00955776;
- 80% Identity
- iTF_00995522;