Mrel042547.1
Basic Information
- Insect
- Mantis religiosa
- Gene Symbol
- -
- Assembly
- GCA_030765055.1
- Location
- CM060952.1:75279951-75281063[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0029 1.3 11.9 4.6 1 23 2 24 2 24 0.91 2 13 6.2e-06 0.0028 20.3 0.0 2 23 31 52 31 52 0.96 3 13 2e-05 0.0089 18.7 0.1 1 23 58 80 58 80 0.94 4 13 1.3e-05 0.006 19.3 1.2 1 23 86 108 86 108 0.95 5 13 2.3e-05 0.01 18.5 3.9 1 23 114 136 114 136 0.96 6 13 8.7e-06 0.0039 19.9 0.9 1 23 142 164 142 164 0.97 7 13 0.00012 0.052 16.3 0.3 1 23 170 192 170 192 0.96 8 13 0.0041 1.8 11.4 2.4 1 23 198 220 198 220 0.96 9 13 1.1e-05 0.0051 19.5 0.2 1 23 226 248 226 248 0.96 10 13 2.5e-07 0.00011 24.7 0.3 1 23 254 276 254 276 0.97 11 13 4.8e-07 0.00021 23.8 0.4 1 23 282 304 282 304 0.96 12 13 2.8e-07 0.00012 24.6 0.7 1 23 310 332 310 332 0.98 13 13 0.00018 0.082 15.7 3.7 1 23 338 360 338 360 0.96
Sequence Information
- Coding Sequence
- ATGCATAAGTGCAAATACTGCCCCAAGGAGTTTGCCAACATTGCAACTTTCAAGAAGCACTGTCTAATACACACCGGAAGGAAGCCGCGTGTGTGTGAAGTGTGTGGAAAAGCTTTTGCAGACACCAGTTACCTCAAAGTTCACGCTCAGATCCACAGAGGGGAGAGGCCCCATGCATGTAACATATGTGGTAGAGCATTCACGCAGATTGGAGATCTTAGGATACATTCACTTATCCATACGGGGGAAAAGCGACACATCTGTGCAATCTGTGGCAAAGCATTCACACATGCCAACACATTGCGAGAACATACATTACTACATACTGGGGAAAAGCCCCACATATGTACAGTTTGTGGCAAGGGGTTTGTTAAGTCATGCAATCTGAGGAGACACTCTCTAACTCATGGTGGGGTTCGGCCCCACATGTGCCAAGTGTGTGGGAAGGGTTTCATTCAACTAGGAGACCTAAAGACACATACACTAAAACACATTGGAGAAAGACCACACATCTGCAACATCTGTGGTAAGGCATTCTCTTTAGCAAGTATACTCAAGACACATACTTTAATTCACAGTGGGGAGAAGCCCCATGTATGTGATGTGTGCGGTAAAGCATTCTTGCGGGCTTGTCGTCTTAAAAAACACAACATGATCCACACAGGAGAACGTCCCTATGTGTGTTCTGTGTGTGGCAAAGCATTCAAAGTGTCCAGTGTCCTCAAAGCTCACTTCTATATACATACGGGGGAAAAACCCTATTCTTGTACAGAGTGTGGCAAATCATTCTCAGACTCTGGCTATCTCCGAATACACTCGCTAATACACAAAGGGGAGAAGCCACATGTATGTGAAGTTTGTGGAAGGGCGTTTGTGCAATCCTCGGACCTGAAGCGACATTCGCTGGTGCATACGGGTGAGAAACCTTACATTTGCAGCGTCTGCAGCAAAGCCTTCTCCTTGTCTAGCACACTCAAGACTCATATGAGAATACACACTGGGGAGAAGCCCCACGTCTGCAGCATCTGTCACAGGGCATTCACCCTCTCCAGAGACTTAAGGAAACATTCACTTTCACATAACGAAATCCTAATAGCTTCTATTAAAGAGTGA
- Protein Sequence
- MHKCKYCPKEFANIATFKKHCLIHTGRKPRVCEVCGKAFADTSYLKVHAQIHRGERPHACNICGRAFTQIGDLRIHSLIHTGEKRHICAICGKAFTHANTLREHTLLHTGEKPHICTVCGKGFVKSCNLRRHSLTHGGVRPHMCQVCGKGFIQLGDLKTHTLKHIGERPHICNICGKAFSLASILKTHTLIHSGEKPHVCDVCGKAFLRACRLKKHNMIHTGERPYVCSVCGKAFKVSSVLKAHFYIHTGEKPYSCTECGKSFSDSGYLRIHSLIHKGEKPHVCEVCGRAFVQSSDLKRHSLVHTGEKPYICSVCSKAFSLSSTLKTHMRIHTGEKPHVCSICHRAFTLSRDLRKHSLSHNEILIASIKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995994; iTF_00995522; iTF_00434993; iTF_01410921;
- 90% Identity
- iTF_00995994; iTF_00995522;
- 80% Identity
- -