Mvio000629.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060830.1:17340774-17357228[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0038 2.9 9.9 0.0 22 51 209 238 206 240 0.85 2 11 0.96 7.3e+02 2.2 0.0 22 51 237 266 233 268 0.84 3 11 0.15 1.1e+02 4.8 0.1 22 45 265 288 261 295 0.88 4 11 0.011 8.5 8.4 0.3 22 51 321 350 317 353 0.85 5 11 3.6 2.8e+03 0.3 0.0 22 47 405 430 402 436 0.80 6 11 0.024 19 7.3 0.0 22 47 433 458 430 465 0.83 7 11 7.6 5.8e+03 -0.7 0.1 23 44 462 483 458 490 0.84 8 11 6.6 5e+03 -0.5 0.0 27 51 522 546 520 548 0.76 9 11 0.63 4.8e+02 2.8 0.0 22 45 545 568 541 576 0.84 10 11 1.3 1e+03 1.8 0.1 22 48 573 599 568 603 0.82 11 11 0.068 52 5.9 0.1 22 44 601 623 598 632 0.86
Sequence Information
- Coding Sequence
- atggatattaaacTAGAAGTTAAGAAAGAACCTCGGAATCCTGATACTTATTCATTTGATTTGAAACCAGAAATTAAGGAGGAAAATGGCTGTTGTGTCACTTTGTTGGAAAATGAGGTAAAgTGTCAGGAAGTTGTAAATGATTGTGATAACTTTGAGAAAATTAATATCAAACTAGAGATTAAAGAAGAGGCACTGGGCCCTGATACAGATGCATGTGAGTTGAAATCAGAAACTGTTGAAGCAAGTGTATGTAATCCTGTTGATGATGCTGGGCTGGAGACTGAGGTAAAGGGGCAGAAACATGTTGATATAGCTTTAATGAAGGAAGAGATCACAATTGAAGAGTTAACTTTATCATACAATGATCAAGGATCACATACAGAAGACCTATCCAGTTATTTGGACAATCCATCCACTTCATTTGTTGATGTTATGCTGAACAGAAAAGACAACACAGAGAAGCAGATATTAGCATGCAAATTTTGTGATAGTACTTTCCCTACCTCTTCATCTTTAAAAGAACATATACTAATGCACGGATCTAAAAGAAAACATAAGCTCTGTGAAAAAAGTTTTACTCGGGTATCAAAATTGgcaaatcatatttatattaatgaagataataaaccacacaagtgtgaagtttgtggaaagaactttacTCAGGCAGGTAATAtgaggagacatcttttgattcatgagggtaagaaaccctataagtgtgaagtttgtgggaagagctttactcataCATCTAATTTAAAGgctcatcttttaattcatgagggcaagaaaccgcacaagtgtgaaatttgtggtaaAAGCTTTACACAGGCATGTCATATGAGGaaacatctttttattcatgaGGAAAAGAAACAACATAAGTGCGACATTTGTGGGAACAGCTTTACCAAGGCATCTAAATTGATgtctcatcttttgattcatgagggcaagaagccccataggtgtgaaatttgtggaaagagctttgcTCAAGCATGTAATGTGAGAAAACATCTTTTGGTTCACGAGGGCAAGAAACCCCATAAGTGTGAGGTTTGTGAAAAAAGTTTTACCCTGATATCTACTTTGAAGGCTcaccttttgattcatgaaggcaagaagCCTCATAAGTGTgaattttgtgggaagagctttactctgACATCTACTTTGAGggatcatcttttgattcatgagggtaagaagccgcATAAGTGTGacatttgtggaaagagctttacccagataTCTCATTTGAAGGGACatgttttgattcatgagggcaaaaagccttataagtgtgaagtttgtggtaagagctttactcaaacaagtaatatgagaAAACATCTTTTGACTCATGAGAGGAAGAAGCCACATGAGTGTCAAGtttgtgggaaaagatttacCCAGACGTCTcatttaaaaacacatattttgattcatgggGTCAAGAAATCACTGGAATGTGAAGTTTATGGCAATAGTTTTAACCAGCCAACTAATCTGAGGGAACagcttttgattcatgagggcaggAAGCTCTATATGTGTGAAcattgtgggaaaagctttaccgATTCATCTACTCTAAGGAAACATCTTTtcattcatgagggcaagaaaccatataaatgtgaaatttgtgggaagtgTTTTACCCAGACATCTCATTTGAAGGGACATCTTTTGagtcatgagggcaagaagccccaTAAGTGTGATGTTTGTGGGAAATGTTTTACCAGGACATCTCATTTAAGagtacatcttttgattcatgagggcaagaagccctATAAGTGTGAAATATGTGAGACACGATTTACCCAAATGTCTTCTTTGAGGAAACATCTTTTAGCACATGAGAACAAGGCACCTTGTAAATgggaaatttgtgggaagagctttatccaaTCATCTAATATTAAAGGCAAAAACACATGA
- Protein Sequence
- MDIKLEVKKEPRNPDTYSFDLKPEIKEENGCCVTLLENEVKCQEVVNDCDNFEKINIKLEIKEEALGPDTDACELKSETVEASVCNPVDDAGLETEVKGQKHVDIALMKEEITIEELTLSYNDQGSHTEDLSSYLDNPSTSFVDVMLNRKDNTEKQILACKFCDSTFPTSSSLKEHILMHGSKRKHKLCEKSFTRVSKLANHIYINEDNKPHKCEVCGKNFTQAGNMRRHLLIHEGKKPYKCEVCGKSFTHTSNLKAHLLIHEGKKPHKCEICGKSFTQACHMRKHLFIHEEKKQHKCDICGNSFTKASKLMSHLLIHEGKKPHRCEICGKSFAQACNVRKHLLVHEGKKPHKCEVCEKSFTLISTLKAHLLIHEGKKPHKCEFCGKSFTLTSTLRDHLLIHEGKKPHKCDICGKSFTQISHLKGHVLIHEGKKPYKCEVCGKSFTQTSNMRKHLLTHERKKPHECQVCGKRFTQTSHLKTHILIHGVKKSLECEVYGNSFNQPTNLREQLLIHEGRKLYMCEHCGKSFTDSSTLRKHLFIHEGKKPYKCEICGKCFTQTSHLKGHLLSHEGKKPHKCDVCGKCFTRTSHLRVHLLIHEGKKPYKCEICETRFTQMSSLRKHLLAHENKAPCKWEICGKSFIQSSNIKGKNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995446;
- 90% Identity
- iTF_00995446;
- 80% Identity
- iTF_00995446;