Mvio027648.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060838.1:19625186-19626670[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.1 2.4e+03 0.5 0.0 39 52 8 21 6 23 0.91 2 12 0.034 26 6.8 0.3 22 52 19 49 10 51 0.87 3 12 1.5 1.1e+03 1.6 0.0 21 47 46 72 44 78 0.69 4 12 0.85 6.5e+02 2.4 0.0 22 45 75 98 71 104 0.88 5 12 0.89 6.8e+02 2.3 0.1 22 51 131 160 127 162 0.80 6 12 0.64 4.9e+02 2.7 0.0 22 45 159 182 156 186 0.89 7 12 0.74 5.6e+02 2.5 0.1 21 52 186 217 183 219 0.85 8 12 0.53 4.1e+02 3.0 0.0 22 51 243 272 237 274 0.83 9 12 0.0059 4.5 9.3 0.1 22 52 271 301 268 303 0.92 10 12 2.1 1.6e+03 1.1 0.0 22 52 355 385 350 387 0.82 11 12 0.089 68 5.5 0.1 22 51 411 440 408 442 0.85 12 12 0.0051 3.9 9.5 0.1 22 52 439 469 436 470 0.92
Sequence Information
- Coding Sequence
- atgGGCTTTACCTGGCCATCTAATTTAAGgagtcatcttttgatacataagtataagaaaccatataaatgtgaaatttgtgagaagagctttactcagacatcTAGTTTAAGgaatcatcttttgatacataaggatgagaaaccacataaatgtgaagtttgtggaaaaagctTTACCCGGAAATCTAGGTTAATTAATCACCTTTTGATTCataagggtaagaaaccacaaaaatgtgaagtttgtggggaGAGCATTACTCAGAAATGTAGTTTATGGAATCATCTTTTGATACACAAGGATGAGAaactacataaatgtgaagtttgtgggaagagctttactcacaGATCTAGTTTATGGAATCATCTTTTGACACATAAGGATgataaaccacataaatgtaaagtttgtggaaagagctttactcgGAAATATAGGTTACGTAatcatcttttgatgcatgagggtaagaaaccacataaatgtgaagtttgtgagaagagctttacctgGTCATCTAGTTTAAGGAATCATCTTGTGATACATAAGGATGAGgaaccacataaatgtgaggtttgtggaaagagctttactcagaAATGTAGTTTAAGcaatcatcttttgattcatgagggtaagaaaccacataaatgtgaagtttgtggaaagagctttactctgaaaatttatttaaagattcaTCTTTCagttcatgagggtaagaaaccatataaatgtgaagtttgtgggaggAGCTTTACTCAGACATCTAGTTTAAAgaatcatcttttgatacatgagggtaagaaaccacataaatgtgaagtttgcgagaagagctttactcagaaaTCCAGTTTAAGGaagcatcttttgattcatgattATAAGAAACCatgtaaatgtgaagtttgtggaaagagctttactgGGAAATCTGGATTAAGCAatcatcttttgatgcatgagggtaagaaaccacataaatgtgaagtttgtgagaagagctttacctgGCCATCTAGTTTAAGGACTCATCTTGTGACACATAAGGatgagaaaaaacataaatgtgagatttgtggaaagagctttactcagaAATCTAGTTTAAGcaatcatcttttgattcatgagggtaagaaaccacataaatgtgaagtttgtggaaagagctttactctgaaaatttatttaaagattcatcttttgattcatgagggtaagaaaccacataaatgtgaagtttgtgggaagagctttactcagacatcTAGTTTAAGgaatcatcttttgatacatgagggtaagaaaccacataaatgtgaagtttgcgagaagagctttactcagacatcCAGTTTAAGGaagcatcttttgattcatgaatataagaaaccatataaatgtgaagtttgtggaaagagctttactcgGAAATCTGGGTTAAGTAGTCATCTTTTAATACATAAAGAttag
- Protein Sequence
- MGFTWPSNLRSHLLIHKYKKPYKCEICEKSFTQTSSLRNHLLIHKDEKPHKCEVCGKSFTRKSRLINHLLIHKGKKPQKCEVCGESITQKCSLWNHLLIHKDEKLHKCEVCGKSFTHRSSLWNHLLTHKDDKPHKCKVCGKSFTRKYRLRNHLLMHEGKKPHKCEVCEKSFTWSSSLRNHLVIHKDEEPHKCEVCGKSFTQKCSLSNHLLIHEGKKPHKCEVCGKSFTLKIYLKIHLSVHEGKKPYKCEVCGRSFTQTSSLKNHLLIHEGKKPHKCEVCEKSFTQKSSLRKHLLIHDYKKPCKCEVCGKSFTGKSGLSNHLLMHEGKKPHKCEVCEKSFTWPSSLRTHLVTHKDEKKHKCEICGKSFTQKSSLSNHLLIHEGKKPHKCEVCGKSFTLKIYLKIHLLIHEGKKPHKCEVCGKSFTQTSSLRNHLLIHEGKKPHKCEVCEKSFTQTSSLRKHLLIHEYKKPYKCEVCGKSFTRKSGLSSHLLIHKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995371;
- 90% Identity
- iTF_00995371;
- 80% Identity
- iTF_00995371;