Mvio024820.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060837.1:2559585-2560937[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.21 1.6e+02 4.3 0.1 21 52 62 93 42 95 0.78 2 11 0.68 5.2e+02 2.7 0.0 23 52 92 121 88 122 0.84 3 11 0.55 4.2e+02 3.0 0.0 23 48 120 145 116 150 0.85 4 11 0.23 1.7e+02 4.2 0.0 23 45 148 170 144 177 0.88 5 11 0.063 49 6.0 0.2 22 45 203 226 199 232 0.87 6 11 0.9 6.9e+02 2.3 0.0 26 44 232 250 228 259 0.86 7 11 0.18 1.4e+02 4.5 0.0 23 52 285 314 269 316 0.88 8 11 0.074 57 5.7 0.0 22 50 340 368 337 371 0.84 9 11 0.21 1.6e+02 4.3 0.0 22 52 368 398 365 400 0.84 10 11 7.3 5.6e+03 -0.6 0.0 23 52 397 426 394 426 0.77 11 11 0.078 60 5.7 0.2 22 44 424 446 412 449 0.92
Sequence Information
- Coding Sequence
- ATGTCCAGCAATTTGGAAAATTCACCCAACACTTCTATTATTGAAGTTTCACAGAATTGCAAAGACATTGAAAACAAGCTGATATTCCCCTGTAAAGTTAATAATAGCACTTTCTCCACTTCTCCATCTATAAAAGATCATAAATCTATTCCTgagcataaaaaaaataatttaatccatGTGAGCAAGAAGCTATATAAGTGTAAAGTTTGTAgcaagagctttacccagacatctaCCTTGAggtcacatcttttgattcatgagggtagtaaaccatataaatgtgaaatttgtaacAAGAACTTTACCTGGGTATCTAACTTGAagtcacatcttttgattcatgagggtataaagccacataaatgtgaagtttgtaacAAGAGTTTTACCCAGGCATCTACATTGAagtcacatcttttgattcatgagggcttaaagccatataaatgtgaagtttgtggcaagagTTTTACCCAGGCATCTAACTTGAagggacatcttttgattcatgagggtaagaaactacataagtgtgaaatttgtgcaAAAAGCTTTACCCTCTCATGTACCTTaaaggaacatcttttgattcatgaaggtaagagaCCACATATGTGTAAAATTTGCAGGAAGAGTTTTACCCAGTTATCTACCTTGAAGAGACATCTTTTggttcatgagggcaagaagtgtgaaatttgtggaaagaactttacTCAGGCATCTACCTTGAGCAGACATCTTTTgactcatgagggtaagaaacaacataaatgtgaagtttgtagcAAGAGCTTTACACATGCATCTACCTTGAAGTcccatcttttgattcatgagggtataaagccatataaatgtaaattttgtagcAAGAGCTTTACTCAGGCATCTAACCTAAAGgggcatcttttgattcatgagggtaagaagccacataaatgtgaattttgtacCAAAAGCTTTACCTTTGCATGTACATTaaaggaacatcttttgattcacgaggGCAAGAAaccccataaatgtgaagtttgtgggaagagctttacccaggtATCTACCTTGAAGAGACATCTCTTGATTCATGAGGACAAGAAGCCATatcattgtaaattttgtaacaagAGCTTTATCCAGGCATCTAACTTGAAGGGacaccttttgattcatgagggtaagaaaccacataaatgtgaaatttgtggcaagagctttacTCTTCCATGTACCTTAAAGGAACATCTTTTGGTTCATGAACATAAGAAACCAcaaaaatgtgaagtttgtgggaagataTTTACCCGGGTAACTACTTTGAGAAGACATCTGTTAACTCATAAATAA
- Protein Sequence
- MSSNLENSPNTSIIEVSQNCKDIENKLIFPCKVNNSTFSTSPSIKDHKSIPEHKKNNLIHVSKKLYKCKVCSKSFTQTSTLRSHLLIHEGSKPYKCEICNKNFTWVSNLKSHLLIHEGIKPHKCEVCNKSFTQASTLKSHLLIHEGLKPYKCEVCGKSFTQASNLKGHLLIHEGKKLHKCEICAKSFTLSCTLKEHLLIHEGKRPHMCKICRKSFTQLSTLKRHLLVHEGKKCEICGKNFTQASTLSRHLLTHEGKKQHKCEVCSKSFTHASTLKSHLLIHEGIKPYKCKFCSKSFTQASNLKGHLLIHEGKKPHKCEFCTKSFTFACTLKEHLLIHEGKKPHKCEVCGKSFTQVSTLKRHLLIHEDKKPYHCKFCNKSFIQASNLKGHLLIHEGKKPHKCEICGKSFTLPCTLKEHLLVHEHKKPQKCEVCGKIFTRVTTLRRHLLTHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995394;
- 90% Identity
- iTF_00995394;
- 80% Identity
- iTF_00995394;