Mvio002826.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060830.1:94485484-94491927[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.98 7.5e+02 2.2 0.4 26 44 116 134 109 141 0.86 2 11 0.0027 2.1 10.3 0.1 22 45 140 163 136 169 0.87 3 11 0.0038 2.9 9.9 0.1 19 48 193 222 178 226 0.81 4 11 0.49 3.7e+02 3.1 0.2 22 44 224 246 221 252 0.87 5 11 0.0048 3.7 9.6 0.0 22 52 252 282 249 284 0.87 6 11 0.25 1.9e+02 4.1 0.1 23 47 281 305 277 311 0.83 7 11 5.6 4.3e+03 -0.3 0.0 22 44 308 330 304 337 0.79 8 11 1.1 8.2e+02 2.0 0.0 26 51 340 365 335 367 0.84 9 11 0.022 17 7.4 0.1 22 52 364 394 361 396 0.85 10 11 1.6 1.2e+03 1.5 0.1 22 46 392 416 388 424 0.84 11 11 0.46 3.5e+02 3.2 0.1 26 44 424 442 417 445 0.85
Sequence Information
- Coding Sequence
- ATGATAGGATATGTAGATACGAATCCCCTTAATAAGCCTTGTAATCACCTTGTTGTCAATGCTGCAGCATGGAAATATGCATGGGAAGAGAAAGAAGTTGACATAGCATTAATCAAGGAGGAGATTATAGTTGGGGAACTAGATGTTTCATACAGTAGTCCAAGGTCACATGTAGAAGATCTCTCCAGTAATTTCAGCAATTCATCTGCTTCTTTTGTTGATGTACTAGAAAGCAAAGGCAATGTAAAAGAGCAGATATTTACTTGTATACCTTGTGGCAGTGCTTTCACCAATTCTTCATCTTTTAAAGAGcatatattaaaacaagaatGTGTAAGAAAACATAAGTGCAAGATTTGTGGAAAATGCTTTACTCGAGCATCAAACTTAAGATACCATATTTTGATTCATAAAGGCAAGGAGCCACATACGTGTGAtatttgtgggaaaagctttatcCAGCCATCTAATTTGAGATACCATCTATTAATACATGAGGGCAAGAAGCTACAACAAGTTGCAGTTTGTGGAAAAGACTTAACTGGAGCATCACAACCTCAGGAACATCTTTCAAATCATGAGGTAAAGAAGCCCCATAGCTGTAAATTTTGTGGAAGTAGCTTTTCTCAGGCAGCTACTTTGAGGaggcatcttttgattcatgagggcaagaagcctcACAAGTGTGAATATTGTGGAAGGAGCTTTACTCAGGCATCTACTCTGCGAAGACAtcatttgattcatgagggcaaaaagccaCACAAATGTGATGTCTGTGGGAAAAGCTTTTCCCAGGCATCAAATTTGaggaaacatattttgattcatgaaggtacaaagccacataagtgtgaattTTGTGAGAAAAGGTTTACTCAGGCATCTCAtttgaggaaacatcttttgactCATGAGGACAACAAgccaaataaatgcaaaatttgtgggaagagctttactgaAGAATCTCAAATgaaggaacatcttttgattcatgagcgCAAGAAGCTATAtaattgtgaagtttgtggaaagaactttacTCAGGCATCTAATTTGAAcagtcatcttttgattcatgagggcaagaagccacataaatgtgaattttgtgggagGAGCTTTACGCAGGCATCTACtctaaggagacatcttttgattcatgagggcaagaagccacataaatgtaaagtttgtgctAAGAGCTTTACTCGGGCATCTAATTTGAGcattcatcttttgattcatgaaggaaagaagtCTCATGTCTGTGAAtattgtgggaagagctttacccaggcatctaCTTTGAGGAGACATCTCTTAATTCATTAG
- Protein Sequence
- MIGYVDTNPLNKPCNHLVVNAAAWKYAWEEKEVDIALIKEEIIVGELDVSYSSPRSHVEDLSSNFSNSSASFVDVLESKGNVKEQIFTCIPCGSAFTNSSSFKEHILKQECVRKHKCKICGKCFTRASNLRYHILIHKGKEPHTCDICGKSFIQPSNLRYHLLIHEGKKLQQVAVCGKDLTGASQPQEHLSNHEVKKPHSCKFCGSSFSQAATLRRHLLIHEGKKPHKCEYCGRSFTQASTLRRHHLIHEGKKPHKCDVCGKSFSQASNLRKHILIHEGTKPHKCEFCEKRFTQASHLRKHLLTHEDNKPNKCKICGKSFTEESQMKEHLLIHERKKLYNCEVCGKNFTQASNLNSHLLIHEGKKPHKCEFCGRSFTQASTLRRHLLIHEGKKPHKCKVCAKSFTRASNLSIHLLIHEGKKSHVCEYCGKSFTQASTLRRHLLIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995363;
- 90% Identity
- iTF_00995363;
- 80% Identity
- iTF_00995363;