Basic Information

Insect: Metallyticus violacea
Gene Symbol: tc1a
Assembly: GCA_030762175.1
Location: CM060830.1:30299402-30311314[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.5 1.9e+03 0.9 0.2 36 52 144 160 130 180 0.75

2 12 0.0078 6 8.9 0.0 23 51 187 215 182 217 0.86

3 12 0.073 56 5.8 0.2 23 52 215 244 211 246 0.90

4 12 0.17 1.3e+02 4.6 0.1 22 51 270 299 267 301 0.85

5 12 0.011 8.6 8.4 0.1 22 50 298 326 294 330 0.84

6 12 1.3 9.9e+02 1.8 0.0 22 52 326 356 322 356 0.85

7 12 0.033 26 6.8 0.1 22 46 354 378 351 385 0.87

8 12 0.088 67 5.5 0.1 22 51 410 439 406 441 0.85

9 12 0.17 1.3e+02 4.6 0.1 22 46 438 462 435 469 0.88

10 12 0.46 3.5e+02 3.2 0.0 26 47 470 491 462 496 0.83

11 12 0.026 20 7.2 1.8 21 52 493 524 489 526 0.81

12 12 0.93 7.1e+02 2.2 0.1 20 45 520 545 517 550 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.5	1.9e+03	0.9	0.2	36	52	144	160	130	180	0.75
2	12	0.0078	6	8.9	0.0	23	51	187	215	182	217	0.86
3	12	0.073	56	5.8	0.2	23	52	215	244	211	246	0.90
4	12	0.17	1.3e+02	4.6	0.1	22	51	270	299	267	301	0.85
5	12	0.011	8.6	8.4	0.1	22	50	298	326	294	330	0.84
6	12	1.3	9.9e+02	1.8	0.0	22	52	326	356	322	356	0.85
7	12	0.033	26	6.8	0.1	22	46	354	378	351	385	0.87
8	12	0.088	67	5.5	0.1	22	51	410	439	406	441	0.85
9	12	0.17	1.3e+02	4.6	0.1	22	46	438	462	435	469	0.88
10	12	0.46	3.5e+02	3.2	0.0	26	47	470	491	462	496	0.83
11	12	0.026	20	7.2	1.8	21	52	493	524	489	526	0.81
12	12	0.93	7.1e+02	2.2	0.1	20	45	520	545	517	550	0.89

Sequence Information

Coding Sequence: ATGGATTTGAGCAACACTTTCTTCAGGAAACAatggagcttccagcaggattcagcaccAGTTCACAAGGCAAAGTCTACCCAGGACTGGCTGCAGAGAAATGTTCCAGACTTCATTGCAATGGATGATTGGCCTTCCAGCAGCCCTGACCTGAACCCATTGTACAAGTTGTGGTCCATGCTTGAAGGCATGGTCTATAAGAAGAGTTATCCCAGTATCAACAGCCTTAAGCGCTCCTTGGTGAAAGCAGTGGCAGATTTTCCTATGGAGACTGTGCATAATTCCATTGATGCATGGCCACAGAGACTTAGGGCCTGTGAACAGGAACTTGACATAGCTGTAATGAAGGATAAGGTCAAAGTTGAGGAATTTAATATTCCTGGGGCCAGGAAGTCACATAAGTGTGAAGCTTGTGGAAAGAGCTTTTTCAAAGAATCTAGTTTGAGGCAACATCTTTTAATTCGTGAGtccaagaagccacataaatgtgaagtttgtgggaagagctttacataTGCATATTCATTAAGGATACATACTTTCATTCATGAGGGCACgaagcctcataaatgtgaaatttgcggAAAGAGCTTTACACAAGCAAAAACTTTGAGACAACATCTTATGATTCATGAGGGCAGAAAGCCATTTAAGTGTGGAGTTTGTGAAAAGAGCTTCACCCAGACAGCTCATTTAAGAGAACATCTTGTTATTCATGAATGCATAAAGCCACACAAGTgcaaagtttgtgggaagagctttgccCATCCATCTACATTAAGGATACATTtgttgattcatgaaggtaagaagccccataaatgtgaagtttgtgggaagagttttacccaACCATCAACACTGAGGcagcatcttttaattcatgagggcaagaagccacataagtgtgaaatttgtggcaaAAGCTTTACTCAGGCATCAACACTGCGGCGCCATTTTTTAATTCACGAGGGCAAGAAgccccataagtgtgaagtttgtgggaagagctttacccatacATCTACTTTAAGGACACATTTGTTGATTCACAAAGGTAataagccacataaatgtgaaatttgtgaaaagaacTTTACCCAGGCATCAACATTGAGgcaacatcttttaattcataaaGGCAAGAAGtcccataaatgtgaagtttgtggcaagagctttaTCCGAGCACCTGATTTGAGAGAGCATGTTTTAATTCATGAgtgcaagaagccacataagtgtgaagtttgtggaaaaagctTTACTCATGCATCTAATTTAAGAACACATTtgttgattcatgagggtaagaagccacataaatgtaaggtttgtgagaagagctttacacaGGGATCAACATTGAGAcagcatcttttaattcatgaagggAGGAAGtcccataaatgtgaaatttgtggcaacagctttacccaggcatctcGTTTGAGAGAACATCTTTGGACTCATGAGAGCatgaagccacataagtgtgaaatttgttgTAAGAGCTTTATCCGAGCATCACGTTTGAGAGAGCATCTTTTAATTCACCAGTGCAAGAAGCCCcataaatgtgaggtttgtgGAAAAAGCTTTACTCAAGCATCTACTTTGGggcaacatcttttgattcacgaggACAAGAAACTCTTTAGCTGA
Protein Sequence: MDLSNTFFRKQWSFQQDSAPVHKAKSTQDWLQRNVPDFIAMDDWPSSSPDLNPLYKLWSMLEGMVYKKSYPSINSLKRSLVKAVADFPMETVHNSIDAWPQRLRACEQELDIAVMKDKVKVEEFNIPGARKSHKCEACGKSFFKESSLRQHLLIRESKKPHKCEVCGKSFTYAYSLRIHTFIHEGTKPHKCEICGKSFTQAKTLRQHLMIHEGRKPFKCGVCEKSFTQTAHLREHLVIHECIKPHKCKVCGKSFAHPSTLRIHLLIHEGKKPHKCEVCGKSFTQPSTLRQHLLIHEGKKPHKCEICGKSFTQASTLRRHFLIHEGKKPHKCEVCGKSFTHTSTLRTHLLIHKGNKPHKCEICEKNFTQASTLRQHLLIHKGKKSHKCEVCGKSFIRAPDLREHVLIHECKKPHKCEVCGKSFTHASNLRTHLLIHEGKKPHKCKVCEKSFTQGSTLRQHLLIHEGRKSHKCEICGNSFTQASRLREHLWTHESMKPHKCEICCKSFIRASRLREHLLIHQCKKPHKCEVCGKSFTQASTLGQHLLIHEDKKLFS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00995453;
90% Identity: iTF_00995453;
80% Identity: iTF_00995453;