Basic Information

Insect: Metallyticus violacea
Gene Symbol: -
Assembly: GCA_030762175.1
Location: CM060830.1:16653299-16701175[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 2.1 1.6e+03 1.1 0.1 25 48 85 107 79 111 0.76

2 24 0.76 5.8e+02 2.5 0.1 21 47 108 134 105 141 0.83

3 24 8.1 6.2e+03 -0.8 0.0 22 44 137 159 130 165 0.85

4 24 3.1 2.4e+03 0.5 0.1 24 52 195 223 191 225 0.83

5 24 5.3 4.1e+03 -0.2 0.0 23 50 222 249 217 252 0.83

6 24 5.5 4.2e+03 -0.2 0.0 22 48 249 275 246 280 0.81

7 24 2.1 1.6e+03 1.1 0.1 22 45 277 300 273 306 0.87

8 24 7.5 5.8e+03 -0.7 0.0 27 44 330 347 325 355 0.84

9 24 4.4 3.4e+03 0.1 0.1 26 51 357 382 352 384 0.78

10 24 0.043 33 6.5 0.0 22 46 381 405 377 411 0.87

11 24 1.9 1.4e+03 1.2 0.0 26 45 413 432 406 437 0.86

12 24 0.14 1.1e+02 4.8 0.1 22 52 465 495 461 497 0.85

13 24 0.79 6e+02 2.5 0.0 22 44 493 515 490 523 0.85

14 24 0.74 5.7e+02 2.5 0.1 22 51 521 550 516 552 0.84

15 24 1.1 8e+02 2.1 0.0 20 48 547 575 531 580 0.77

16 24 0.18 1.4e+02 4.5 0.0 22 51 577 606 574 608 0.84

17 24 0.48 3.6e+02 3.2 0.0 22 46 605 629 602 637 0.88

18 24 4.3 3.3e+03 0.1 0.0 26 52 637 663 632 665 0.82

19 24 0.68 5.2e+02 2.7 0.1 22 52 661 691 647 693 0.86

20 24 7.8 6e+03 -0.7 0.1 22 44 689 711 680 720 0.85

21 24 0.45 3.4e+02 3.2 0.0 22 48 804 830 801 834 0.84

22 24 0.033 25 6.9 0.3 22 51 832 861 829 863 0.84

23 24 0.0037 2.8 9.9 0.1 23 52 861 890 857 892 0.86

24 24 0.44 3.4e+02 3.3 0.1 22 44 888 910 885 913 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	2.1	1.6e+03	1.1	0.1	25	48	85	107	79	111	0.76
2	24	0.76	5.8e+02	2.5	0.1	21	47	108	134	105	141	0.83
3	24	8.1	6.2e+03	-0.8	0.0	22	44	137	159	130	165	0.85
4	24	3.1	2.4e+03	0.5	0.1	24	52	195	223	191	225	0.83
5	24	5.3	4.1e+03	-0.2	0.0	23	50	222	249	217	252	0.83
6	24	5.5	4.2e+03	-0.2	0.0	22	48	249	275	246	280	0.81
7	24	2.1	1.6e+03	1.1	0.1	22	45	277	300	273	306	0.87
8	24	7.5	5.8e+03	-0.7	0.0	27	44	330	347	325	355	0.84
9	24	4.4	3.4e+03	0.1	0.1	26	51	357	382	352	384	0.78
10	24	0.043	33	6.5	0.0	22	46	381	405	377	411	0.87
11	24	1.9	1.4e+03	1.2	0.0	26	45	413	432	406	437	0.86
12	24	0.14	1.1e+02	4.8	0.1	22	52	465	495	461	497	0.85
13	24	0.79	6e+02	2.5	0.0	22	44	493	515	490	523	0.85
14	24	0.74	5.7e+02	2.5	0.1	22	51	521	550	516	552	0.84
15	24	1.1	8e+02	2.1	0.0	20	48	547	575	531	580	0.77
16	24	0.18	1.4e+02	4.5	0.0	22	51	577	606	574	608	0.84
17	24	0.48	3.6e+02	3.2	0.0	22	46	605	629	602	637	0.88
18	24	4.3	3.3e+03	0.1	0.0	26	52	637	663	632	665	0.82
19	24	0.68	5.2e+02	2.7	0.1	22	52	661	691	647	693	0.86
20	24	7.8	6e+03	-0.7	0.1	22	44	689	711	680	720	0.85
21	24	0.45	3.4e+02	3.2	0.0	22	48	804	830	801	834	0.84
22	24	0.033	25	6.9	0.3	22	51	832	861	829	863	0.84
23	24	0.0037	2.8	9.9	0.1	23	52	861	890	857	892	0.86
24	24	0.44	3.4e+02	3.3	0.1	22	44	888	910	885	913	0.89

Sequence Information

Coding Sequence: ATGGATTACAAATCAGAGTTCAAGGAGAAACCGGACCCTATTGAAGATACACTTAAGCTTAAATCCAAAATTCTTGAAGAGATTGCATATAAAGTTGGCCATGACACTATTTTGGAAAATGAGGTGAAGGAACAGAAAGAGCTTGACATAGCTGTATTGAAAGAGGAGATCACAATTGAAGAAACAGACTTACCGTACAGTGATGCAAGGCTTTACTACCGCATATACTTTGAAGACACATCCAAGAAGCtacataagtgtgaaatttgtgggaagaatGTTACCCGGGCATCTTCTTTGAGggatcatcttttgattcataaggagaagccacataagtgtgaaatttgtgggaagaatATAAGCGGGGCATCTTCTTTGAGGTTACATCGTATGATTCATGAGGGGAAGAAgccccataagtgtgaagtttgtgggaagaactttacccaggcatctcatttgaaagaacattttttgattcatgagggaaagaaatcacataaatgtgaTATCTATATAAAAAGCTTCACTGCTGCATCTACTTTGAagtcacatcttttgattcatgagggcaagacaCCCCATTTGTGTGaactttgtggaaagagttttatctATGCATCCTATTTGAGAAAGCATCTTTTGGTTCATGAGCATACAAAAccccataagtgtgaagtttgtgacAAGAGCTATACCAAAGCATCTGTTTTGAGggatcatcttttgattcatgagggcaagaagccatataaatgtgaGGTTTGTGGTAAGGGCTTAACCAAAGCTTCTTCTTTGAGGAATCATGTTTTggttcatgagggcaagaaaccctgcaagtgtgaagtttgtggcaagagcTATACCAAAGCAACTGCTTTGAGgaatcatcttttaattcatgagggcaagaagctatataaatatgaaGTATCAGCCTTAAGAAACCATACTTTGAGTCATGAGCACAAGAAGATCCACGAGTGTGAactttgtgggaagagtttttcCCAGTCATCTAAGTTAAAGAAGCATTTTCTGAATCATGAGGCCAATAAttctcataaatgtgaagtttgtgcaaAGAATTTTTCTTATGCATCTACATTAAGAaagcatcttttgattcatgaggccAAGAAACCACAtacatgtgaagtttgtgggaagaactttacgcAAGCATCTTCTTTGAGAGATCATCTTCTGATTCACGAGGGCAAGAAAtcccataaatgtgaagtttgtggaaagggATTTACCCAAGCTTCTACTTTgcggaaacatcttttgattcatgagggtaagaggCTTCATATGTGTGAACTTTGTGGGAAAAGTTTTACCCATGCTTTTACTTTGAGGGGACATCTTTTAACTCATGAAGGCaaaaagccacataagtgtgagtTTTGTGGGGAAAACTTTTCACAGTCATCACATTTGAgggaacatcttttaattcatgagggcaagaagccctGTAAGTGTGaattttgtggaaagagctttgcCCAGTTATCAAATTTAAGGGAACATTTTCTAAACCATAAGGGCAATAAGCCTCATAAGTGCaaagtttgtgagaagagctttacccatCCTTCTGATTTGAGGaagcatcttttgattcatgagggcaagaaaccacataaatgtgaaatttgtggcaagagctttacccaggcatctTCTTTGAAGGGACatgttttgattcatgagggcaacaAACCttataagtgtgaagtttgtgggaagagctttacacaTCCATCTAACTTGAGGaagcatcttttaattcatgagggcaagaagccacataaatgtgaaatttgtggaaagagctttacccaagTATCTACTTTGAGGGGacaccttttgattcatgagggcaataaatatcataaatgtgaagtttgtgagaagagctttacccatCCATCTAATTTGAggggacatcttttgattcatgatggcaagaagccacataaatgtgaaatatgtggaaagagctttacaaAAGCATCTTCTTTAAgggtacatcttttgattcatgaaggcaaaaaaccacataagtgtgaagtttgtgggagaGGTTTCACTCAGACATCTCATTTGAGAATCCACAGTTTAGTTCATAGTTACTTTGAGAAGGGAAATGTCAAACTAGAGCTTAAGGAAGAACCACAGGACCAAGACACATATTCACATGCAATGGCAGTGGAAAATGAGGATGAGACTTGTTATGCTGCTCATAATGCCATTttggagaaagaaataaaaGGATCTTCTTTGCAGCAACATCTTTCAATTCATGAAGGCAAGAAGCTTTATATGTGTGAATATTGTGGAAAAAGTTTTACCACAGCTTTTATTTTGAGAGGACATCTTTTAACTCACGAGGGCAAGAAACCCCATATGTGTGaattttgtgggaaaaactttTCACAGTCATCATATTTAAGGGGACATCTTTTAAtacatgagggcaagaagccctataaatgtgaagtttgtaagAAGAGTTTTTCACATCCATCTAATTTGAGGaggcatcttttgattcatgagggcaggaagccacataaatgtgaaatttgtgggaagagctttatccagGCATCTAATTTgagaaaacatcttttgattcatgaaggcaacAAACCttataagtgtgaagtttgtgagaagagctttagcCATCCATCTAATTTGAGGAAGCACCTTTTGATTCAttag
Protein Sequence: MDYKSEFKEKPDPIEDTLKLKSKILEEIAYKVGHDTILENEVKEQKELDIAVLKEEITIEETDLPYSDARLYYRIYFEDTSKKLHKCEICGKNVTRASSLRDHLLIHKEKPHKCEICGKNISGASSLRLHRMIHEGKKPHKCEVCGKNFTQASHLKEHFLIHEGKKSHKCDIYIKSFTAASTLKSHLLIHEGKTPHLCELCGKSFIYASYLRKHLLVHEHTKPHKCEVCDKSYTKASVLRDHLLIHEGKKPYKCEVCGKGLTKASSLRNHVLVHEGKKPCKCEVCGKSYTKATALRNHLLIHEGKKLYKYEVSALRNHTLSHEHKKIHECELCGKSFSQSSKLKKHFLNHEANNSHKCEVCAKNFSYASTLRKHLLIHEAKKPHTCEVCGKNFTQASSLRDHLLIHEGKKSHKCEVCGKGFTQASTLRKHLLIHEGKRLHMCELCGKSFTHAFTLRGHLLTHEGKKPHKCEFCGENFSQSSHLREHLLIHEGKKPCKCEFCGKSFAQLSNLREHFLNHKGNKPHKCKVCEKSFTHPSDLRKHLLIHEGKKPHKCEICGKSFTQASSLKGHVLIHEGNKPYKCEVCGKSFTHPSNLRKHLLIHEGKKPHKCEICGKSFTQVSTLRGHLLIHEGNKYHKCEVCEKSFTHPSNLRGHLLIHDGKKPHKCEICGKSFTKASSLRVHLLIHEGKKPHKCEVCGRGFTQTSHLRIHSLVHSYFEKGNVKLELKEEPQDQDTYSHAMAVENEDETCYAAHNAILEKEIKGSSLQQHLSIHEGKKLYMCEYCGKSFTTAFILRGHLLTHEGKKPHMCEFCGKNFSQSSYLRGHLLIHEGKKPYKCEVCKKSFSHPSNLRRHLLIHEGRKPHKCEICGKSFIQASNLRKHLLIHEGNKPYKCEVCEKSFSHPSNLRKHLLIH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00995399;
90% Identity: iTF_00995399;
80% Identity: iTF_00995399;