Mvio025155.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060837.1:15029068-15030171[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.66 5e+02 2.7 0.0 22 49 5 32 2 36 0.79 2 12 0.11 86 5.2 0.0 22 51 33 62 30 64 0.84 3 12 0.24 1.8e+02 4.1 0.1 22 52 61 91 58 92 0.85 4 12 0.47 3.6e+02 3.2 0.1 23 47 90 114 86 119 0.82 5 12 0.055 42 6.1 0.1 22 52 117 147 114 149 0.89 6 12 0.56 4.3e+02 2.9 0.2 22 48 145 171 140 175 0.81 7 12 0.17 1.3e+02 4.6 0.1 22 51 173 202 169 204 0.85 8 12 0.016 12 7.9 0.0 22 51 201 230 198 232 0.85 9 12 0.33 2.5e+02 3.7 0.0 22 45 229 252 226 258 0.88 10 12 0.64 4.9e+02 2.7 0.0 26 52 261 287 255 289 0.86 11 12 0.014 11 8.0 0.0 22 51 313 342 310 344 0.85 12 12 0.23 1.7e+02 4.2 0.1 22 45 341 364 338 367 0.85
Sequence Information
- Coding Sequence
- ATGCGTCAGGgtaagaaatcacataaatgtgaaatatgtgggaAGACTTTTACCCGGGCATCTAatttaaaagaacatattttgattcatgaaggtaagaaaccacataagtgtgaagtttgcgGACAGAGCTTTACCTGGGCATctaatttaagggaacatctattgattcatgagggtaagaaaccgcataaatgtgaagtttgtgaaaaaaGTTTTACCCAAATATCCCATTTAAGGACTCACCTTTTTAACCATGAGATTCAAAAGCCTCATAAATGTAAAGattgtgggaagagctttgctcaggcatctaatttaaggatacatattttaattcatgagggtaagaagccacataaatgtgaagtttgtgggaaaagttttACCCAAGTATCTCATTTAAGGACTCATCTTTCTATACATGAGAAGCAgaagcctcataaatgtgaaatttgtgggaaaaggTTTACCAGAGCATCCACCTTAAGgatacatcttttgattcatgagggtaagaaaccacataaatgtgaactttgtggAAATAGCTTTACCCAAGTATctcatttaagggaacatcttttgattcatgagggtaagaagccacataaatgtgaaatttgtggaaagaccTTTACCCAAGCATCAACcttaagggaacatcttttgattcatgaaggtaagaagccacataaatgtgaagtttgtgggaaaagctttacaaAGGTGTCTAATTTAAAGAAGCATCTTTTAGTTCATGAGGACAAAGAtctatataaatgtgaaatttgtgggaagggCTTTACCCAGGAAAGTACTTTAAGAacgcatcttttgattcatgaggggaAGAAGCCACATATGTGTGAAgtatgtgggaagagctttaccctaGCATCAACCTTGAAGGGACATCtcttgattcatgaaggaaaaaagccacataaatgtcAAGTTTGTGGGAAAGGCTTTACCCAATCATCTAATTTAAAGAtccatcttttaattcatgaaggtaaaaaaccacataaatgtgaagtttgtgagaaaagCTTTACTGTAATATCTAACTTAAGGAAACATCTATTGATTCATAAGTGA
- Protein Sequence
- MRQGKKSHKCEICGKTFTRASNLKEHILIHEGKKPHKCEVCGQSFTWASNLREHLLIHEGKKPHKCEVCEKSFTQISHLRTHLFNHEIQKPHKCKDCGKSFAQASNLRIHILIHEGKKPHKCEVCGKSFTQVSHLRTHLSIHEKQKPHKCEICGKRFTRASTLRIHLLIHEGKKPHKCELCGNSFTQVSHLREHLLIHEGKKPHKCEICGKTFTQASTLREHLLIHEGKKPHKCEVCGKSFTKVSNLKKHLLVHEDKDLYKCEICGKGFTQESTLRTHLLIHEGKKPHMCEVCGKSFTLASTLKGHLLIHEGKKPHKCQVCGKGFTQSSNLKIHLLIHEGKKPHKCEVCEKSFTVISNLRKHLLIHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995373; iTF_00995448;
- 90% Identity
- iTF_00995373; iTF_00995448;
- 80% Identity
- iTF_00995373; iTF_00995448;