Mvio016323.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060834.1:9546216-9547319[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.35 2.7e+02 3.6 0.0 22 51 5 34 2 37 0.84 2 12 0.61 4.7e+02 2.8 0.2 22 47 33 58 30 64 0.83 3 12 0.22 1.7e+02 4.3 0.1 23 52 62 91 58 91 0.86 4 12 0.0085 6.5 8.8 0.1 20 50 87 117 85 121 0.85 5 12 0.11 81 5.3 0.1 22 46 145 169 135 177 0.88 6 12 4.6 3.5e+03 -0.0 0.0 22 45 173 196 170 203 0.78 7 12 0.083 64 5.6 0.0 22 47 201 226 196 231 0.84 8 12 0.32 2.5e+02 3.7 0.0 22 45 229 252 226 261 0.85 9 12 3.6 2.8e+03 0.3 0.0 23 48 258 283 254 288 0.78 10 12 0.15 1.1e+02 4.8 0.1 22 52 285 315 281 317 0.87 11 12 0.019 15 7.6 0.0 22 51 313 342 310 344 0.85 12 12 0.012 9.3 8.3 0.0 22 46 341 365 337 367 0.90
Sequence Information
- Coding Sequence
- atGCAAGAGGATAAGAGGCCACGTAAATGTGAAGTATGTGAGAAAGAATTTACACAGACATCttatttgaaaaaacatcttttgattcatgagggcaagaaaccatataaatgtcaAGTTTGTGAGAAGAGTTTTACCCAGGCATCTCACTTAAGGATACactttttgattcatgagggtaggaaaccacataaatgtgaagtttgtgggaaaagtttCACCCAGATATCTCATTTGAGGAATCATCTTTTTATACATGAGAGCCAgaagcctcataaatgtgaagtttgtggtaagagctttacaCAGGTATCTAATTTAAGGGAGCatgttttgattcatgagggtaagaaaccacataaatgtgaagtttgtggtaaaagTTTCACTGCTGTGTCTACTAAGcggaaacatattttaattcatgagggcaagaaaccacataaatgtgaaatttgtggaaaaagctTTACCCAGATATCTCATTTGAGAAATCATCTTTTTATACATGAGAGCCAAAAGcattataaatgtgaagtttgtgggaaaagttttACCCAAGCATCTACCTTAAAGGGACATCTCTTGACtcatgaaggaaagaagccacataaatgtgaaatttgtgggaagagttttacaaAAGTGTCTAATTTAAgagaacatattttaattcatgagggcaagaagcctcATAAATGTACAGTCTGTGGTAAGGGATTTACCCAGGCCTCTACTTTCAGAAAACATCTTTTGGCTCATGAGGGTAGGAAACCATAtaattgtgaagtttgtgggaagaactttactgTGGTATCTGatttaagaaaacatattttgatccatgagggtaagaaaccacataaatgtgaagtttgtggaaaaagctTTATTCAGGCATCTCATTTGAGGGGACATCTGTTGATCCACAAGGGCCAAAagcctcataaatgtaaaatttgtgaaaagagtTTTACCCAAGTGTCTAATTTAAAGgtacatcttttaattcatgatggCAAGAAACCTCATAAGTGTGAAATCTGTGGAAAAGAATTTACTCAGTCATCTACTTTGACAAGACATCTTTCAATTCATAAGTGA
- Protein Sequence
- MQEDKRPRKCEVCEKEFTQTSYLKKHLLIHEGKKPYKCQVCEKSFTQASHLRIHFLIHEGRKPHKCEVCGKSFTQISHLRNHLFIHESQKPHKCEVCGKSFTQVSNLREHVLIHEGKKPHKCEVCGKSFTAVSTKRKHILIHEGKKPHKCEICGKSFTQISHLRNHLFIHESQKHYKCEVCGKSFTQASTLKGHLLTHEGKKPHKCEICGKSFTKVSNLREHILIHEGKKPHKCTVCGKGFTQASTFRKHLLAHEGRKPYNCEVCGKNFTVVSDLRKHILIHEGKKPHKCEVCGKSFIQASHLRGHLLIHKGQKPHKCKICEKSFTQVSNLKVHLLIHDGKKPHKCEICGKEFTQSSTLTRHLSIHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995382; iTF_00995454;
- 90% Identity
- iTF_00995382; iTF_00995454;
- 80% Identity
- iTF_00995382; iTF_00995454;