Mvio024835.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060837.1:3365316-3367775[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0069 5.3 9.0 0.0 26 52 37 63 30 65 0.87 2 24 0.63 4.8e+02 2.8 0.1 22 52 61 91 58 93 0.85 3 24 0.66 5.1e+02 2.7 0.0 22 51 89 118 86 120 0.84 4 24 2.1 1.6e+03 1.1 0.0 22 48 117 143 113 147 0.83 5 24 0.016 12 7.9 0.0 22 44 145 167 141 174 0.88 6 24 0.6 4.6e+02 2.8 0.0 24 51 231 258 226 260 0.84 7 24 1.6 1.3e+03 1.4 0.0 22 48 285 311 282 316 0.82 8 24 0.97 7.4e+02 2.2 0.1 22 44 313 335 310 341 0.88 9 24 0.89 6.8e+02 2.3 0.0 23 52 342 371 338 373 0.88 10 24 5.5 4.2e+03 -0.3 0.0 23 45 370 392 366 398 0.87 11 24 3 2.3e+03 0.6 0.1 26 47 401 422 395 429 0.81 12 24 8 6.1e+03 -0.8 0.0 22 52 425 455 422 456 0.82 13 24 0.38 2.9e+02 3.5 0.1 23 48 454 479 447 485 0.84 14 24 0.16 1.2e+02 4.6 0.0 23 51 510 538 505 540 0.84 15 24 0.023 17 7.4 0.0 22 46 537 561 533 568 0.88 16 24 1.4 1.1e+03 1.6 0.0 22 52 565 595 561 597 0.85 17 24 1.7 1.3e+03 1.4 0.0 22 50 593 621 590 625 0.84 18 24 0.9 6.9e+02 2.3 0.0 22 52 621 651 618 653 0.86 19 24 4.8 3.7e+03 -0.1 0.0 22 45 649 672 645 678 0.85 20 24 5 3.8e+03 -0.1 0.1 27 47 682 702 676 707 0.70 21 24 0.36 2.8e+02 3.5 0.0 21 47 704 730 701 736 0.86 22 24 0.48 3.7e+02 3.1 0.0 26 52 737 763 731 765 0.85 23 24 1.2 9.1e+02 1.9 0.0 22 52 761 791 758 793 0.87 24 24 5.6 4.3e+03 -0.3 0.0 22 44 789 811 786 815 0.88
Sequence Information
- Coding Sequence
- aTGCCAGAAGGCACCAAGCCAGATAAATGTGAGGTTTGTGGAAAGATCTTTACCTTAGCATGTCATTTACAAatgcatcttttgattcatgagaacAACAAATTACatgaatgtgaaatttgtgggaagaccTTTAACCAGGCTTCTAATTTAAGAAAACATCTTTatattcatgagggtaagaaaccacataagtgtgaagtttgtgggaagagctttaacagggcatataatttaacaaagcatcttttgattcatgagggtaaaaaaccacacaagtgtgaaatttgtgggaagagttttaacTGGGCATATAATTTATCAaagcatcttttgattcatgaaggtaagaaaccacataagtgtgaagtttgtgggaagagttttaactgggcatataatttaacaaaacatcttttaattcatgagggcaagaaaccacataaatgtgaaatttgtggaaagaccTTTACCCAGGCTTTtaatttaaggaaacattttttgattcatgagggtaagaaaacACATAAGTGCGAAGTTTGTGATAAGAGCTTTACTCTGGCATCtgatttaacaaaacattttttggttcatgaggataaaatatcatctgagTGTCAAGTTTGTGGGGAGAGCTTTACCGAGGCatctaaattaacaaaacatcttttgattcatgaggacaAAATACCAAATGAGTGTGAAGTGTGTAAAAAGAGGTTTAACAGTGCATCAAATTTAAAGAAGCATCTTTTGGTTCATGAAGatataaaaccacataaatgtgaagaatgtgggaagagctttactgaTGCATATATCTTAAAGAATCATGCTTTTGTTCACGAGGATCAGAAACCACATAagtgtaaagtttgtgggaagagctttaactGGGCATCCAATTTAAAAAAGCATGTTTTGATTCATGAAGATAAGAAACCACACaactgtgaagtttgtgggaagagctttacccaggcaatttatttaaggaaacatattttgattcatgaggataaagaaccacataagtgtgaagtttgtggaaagagctttacccaggcatctaCTCTTACaaaacatctttttattcatgaGAATATAAAACCAcacaagtgtgaagtttgtgggcaGAGTTTTAACTGggcatataatttaacaaaacatcttttaattcatgatggTAAAAGGCAACATAAGTGTGAGGTTTGTCAGAAGAACTTTCGATGGGCATCTGATTTAAGAAAACATCATTTGATTCATGAGGATAATAAACCAcacaagtgtgaagtttgtgggaagagctttgcgGGAGCATCTCGTTTAAGGGAACACTTTTCGATTCATGATGGTAtaaagccacataagtgtgaagtttgtggtaagagcttcACCCGTGCATCTAATTTAAGGCAACATGTTTTGATACATGAAgatgagaaaccacataaatgtaaagtttgtgggaagagctttacagGGGCATATATCTTGAagaatcatcttttgattcatgagggcaatagtccacataagtgtgaaatttgtaaGAGGAGCTTCAACTGGGCATCTAATTTAAAAaagcatcttttgattcatgagggtaaaaaaccacataaatgtgaagtttgtgggaagaactttacccaGGCATTcaatttaaggaaacatcttttgattcatgagggtaatgaaccacataattgtgaagtttgtggaaagagctttacccggGCATCTAATCTAAcaacacatcttttgattcatgagggaaataagccacataagtgtgaagtttgtgggaagagctttaattgggcatataatttaacaaagcatcttttaattcatgaaggtaagaaaccacttaagtgtgaagtttgtgggaagaccTTTAATTGGGCATGtgatttaaggaaacatctttttattcatgaaggtaacaaaccacataaatgtgaagtttgtggaaagaccTTTACAGGAGCATCTcgtttaagggaacatcttttgatacatgatgGTAAAAAGCTACATAAGTgcgaagtttgtgggaaaagtttCATCCGGGTATCTAATTTAAGGCAACATGTGTTGATTCACGAGGATGAGAAAccccataaatgtgaaatttgtggaaagagttttacagGGACATCTCGTTTAAGGGATCATCTTTCAATTCATTATGGTAATAAGGCACATaattgtgaaatttgtggaaagagctttacctgggcatctaatttaagggaacatcttatgattcacgagggtaagaagccacataaatgtaaaatttgtatgaagAGCTTTGCTCGTGCATTTACCTTGAAGGGACATCTTTTgcttcatgagggtaagaaaccacataaatgtgaagtatgtgggGAGAGCTTTACGCATTCTTCTACCttgaagaaacatattttaattcatggggaaaaaaacatgtaa
- Protein Sequence
- MPEGTKPDKCEVCGKIFTLACHLQMHLLIHENNKLHECEICGKTFNQASNLRKHLYIHEGKKPHKCEVCGKSFNRAYNLTKHLLIHEGKKPHKCEICGKSFNWAYNLSKHLLIHEGKKPHKCEVCGKSFNWAYNLTKHLLIHEGKKPHKCEICGKTFTQAFNLRKHFLIHEGKKTHKCEVCDKSFTLASDLTKHFLVHEDKISSECQVCGESFTEASKLTKHLLIHEDKIPNECEVCKKRFNSASNLKKHLLVHEDIKPHKCEECGKSFTDAYILKNHAFVHEDQKPHKCKVCGKSFNWASNLKKHVLIHEDKKPHNCEVCGKSFTQAIYLRKHILIHEDKEPHKCEVCGKSFTQASTLTKHLFIHENIKPHKCEVCGQSFNWAYNLTKHLLIHDGKRQHKCEVCQKNFRWASDLRKHHLIHEDNKPHKCEVCGKSFAGASRLREHFSIHDGIKPHKCEVCGKSFTRASNLRQHVLIHEDEKPHKCKVCGKSFTGAYILKNHLLIHEGNSPHKCEICKRSFNWASNLKKHLLIHEGKKPHKCEVCGKNFTQAFNLRKHLLIHEGNEPHNCEVCGKSFTRASNLTTHLLIHEGNKPHKCEVCGKSFNWAYNLTKHLLIHEGKKPLKCEVCGKTFNWACDLRKHLFIHEGNKPHKCEVCGKTFTGASRLREHLLIHDGKKLHKCEVCGKSFIRVSNLRQHVLIHEDEKPHKCEICGKSFTGTSRLRDHLSIHYGNKAHNCEICGKSFTWASNLREHLMIHEGKKPHKCKICMKSFARAFTLKGHLLLHEGKKPHKCEVCGESFTHSSTLKKHILIHGEKNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995397;
- 90% Identity
- iTF_00995397;
- 80% Identity
- iTF_00995397;