Basic Information

Insect: Metallyticus violacea
Gene Symbol: -
Assembly: GCA_030762175.1
Location: CM060835.1:52156134-52157840[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.35 2.7e+02 3.6 0.0 23 51 6 34 3 36 0.84

2 17 0.22 1.7e+02 4.2 0.1 22 44 33 55 30 61 0.88

3 17 0.15 1.1e+02 4.8 0.0 22 45 61 84 57 90 0.87

4 17 3.5 2.7e+03 0.4 0.1 26 52 93 119 87 121 0.82

5 17 1.5 1.1e+03 1.6 0.0 20 52 115 147 108 149 0.87

6 17 1.7 1.3e+03 1.4 0.0 21 51 144 174 134 175 0.83

7 17 0.35 2.7e+02 3.6 0.0 22 50 173 201 167 204 0.83

8 17 0.85 6.5e+02 2.4 0.0 22 52 201 231 198 233 0.84

9 17 0.57 4.4e+02 2.9 0.1 22 52 257 287 253 289 0.84

10 17 0.09 69 5.5 0.0 23 51 314 342 311 344 0.86

11 17 0.012 9.2 8.3 0.1 22 52 341 371 337 373 0.90

12 17 0.92 7e+02 2.2 0.0 23 44 398 419 393 432 0.85

13 17 5.6 4.3e+03 -0.3 0.0 22 45 425 448 422 453 0.84

14 17 0.07 53 5.8 0.4 22 52 453 483 449 485 0.85

15 17 7 5.4e+03 -0.6 0.0 23 48 482 507 479 512 0.81

16 17 0.36 2.8e+02 3.5 0.0 22 50 509 537 504 540 0.84

17 17 0.077 59 5.7 0.0 22 46 537 561 533 567 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.35	2.7e+02	3.6	0.0	23	51	6	34	3	36	0.84
2	17	0.22	1.7e+02	4.2	0.1	22	44	33	55	30	61	0.88
3	17	0.15	1.1e+02	4.8	0.0	22	45	61	84	57	90	0.87
4	17	3.5	2.7e+03	0.4	0.1	26	52	93	119	87	121	0.82
5	17	1.5	1.1e+03	1.6	0.0	20	52	115	147	108	149	0.87
6	17	1.7	1.3e+03	1.4	0.0	21	51	144	174	134	175	0.83
7	17	0.35	2.7e+02	3.6	0.0	22	50	173	201	167	204	0.83
8	17	0.85	6.5e+02	2.4	0.0	22	52	201	231	198	233	0.84
9	17	0.57	4.4e+02	2.9	0.1	22	52	257	287	253	289	0.84
10	17	0.09	69	5.5	0.0	23	51	314	342	311	344	0.86
11	17	0.012	9.2	8.3	0.1	22	52	341	371	337	373	0.90
12	17	0.92	7e+02	2.2	0.0	23	44	398	419	393	432	0.85
13	17	5.6	4.3e+03	-0.3	0.0	22	45	425	448	422	453	0.84
14	17	0.07	53	5.8	0.4	22	52	453	483	449	485	0.85
15	17	7	5.4e+03	-0.6	0.0	23	48	482	507	479	512	0.81
16	17	0.36	2.8e+02	3.5	0.0	22	50	509	537	504	540	0.84
17	17	0.077	59	5.7	0.0	22	46	537	561	533	567	0.85

Sequence Information

Coding Sequence: ATGCATgggggcaagaagccacataaatgtgaagtttgtgggaagagttttacttGGACATCTAATATAAAGAGACATCTcttgatacatgagggtaagaagccacataaatgtgaaatttgtggtaagagctttacccaggcatgtcatttaaggggacatcttttgacgcatgagggtaagaaaccacatgaATGTGAAGTTTGTAGTAAGAGCTTTACACAGACATCTGATTTAAGGAtgcatcttttgatacatgagggtaaaaaattacataaatgtgaaatttgtagaAAAAGCTTTATCACACCATCTCATTTAAGTAGACATCTTTTGTTGCATGAgagtaagaaaccatataaatgtgaagtttgtggaaagagctttaccaaGACATCTACTTTAAAGGGACATCTTTCggtgcatgagggtaagaaaccatataaatgtgaaatttgtgggaagagctttaccaagACATCTACTTTAAAGGGACATCTTTCcgtgcatgagggtaagaaaccatataaatgtgaaatttgtggaaagagctttaacCAAACATCTACTTTAAAGGGACATCTTTTGGTgcacgagggtaagaaaccacataaatgtgaagtttgtgggaagagctttaccacAACATCTggtttaaggaaacatcttttgatacatgagggtaagaaaccacataaatgtgaagtttgtgggaagcgCTTTACTGTGACATATGGTTTAAGGATACATCTGTTGATacacgagggtaagaaaccacataaatgtgaaatgtgtaGAAAGAGCTTTATCACGCCATCTGATTTAAAGAGACACCTTTtgctgcatgagggtaagaaaccacataaatgtgaagtttgtgaaaagagTTTTGCCACGACATCTACTTTAAAGGGACATCTTATGGTGCACTGGGGTattaaaccatataaatgtgaaatttgtgggaagagctttaaccAGACATCTAGTTTAAGGAGTCATCTTGTggtgcatgagggtaagaaaccatataaatgtgaaatttgtgggaagagctttaaaCGAACATCTCATTTAAAGAGGCATCTTATGTTGCATGAGGGTgtgaaaccacataaatgtgaagtttgtgggaagagctttgccACGACATCTACATTAAAGGGACATCTTTTGGTGCACGAGGTtaggaaaccacataaatgtgaaatttgtgggaagagctttgccCAGGCATCTACTCTAAAGGGACATCTTTTGGGccacgagggtaagaaaccacataaatgtggaGTTTGTGGGAAGGGCTTTACCTGGACATCTggtttaaggaaacatcttttgatacatgagggtaagagaccacataaatgtgaaatttgtagaAAGAGCTTTATCATACCATCtgatttaaggagacatcttttgctGCATGAGGATAAGAAGCCATacaaatgtaaagtttgtgggatGCTCTTTACGGAGACTTCTACTTTAAAGGGACATCTTTTggtgcatgagggtaagaaaccacataaatgtgaaatttgtgggaagagctttacccagacatctTCTTTAAAGGGACATCTTTTggtgcatgagggtaagaaacctcATGAATGTGaggtttgtgggaagagcttttcCTGGCCATctaatttaaggagacatcttttgatgcatgagggtaagaatccatattaa
Protein Sequence: MHGGKKPHKCEVCGKSFTWTSNIKRHLLIHEGKKPHKCEICGKSFTQACHLRGHLLTHEGKKPHECEVCSKSFTQTSDLRMHLLIHEGKKLHKCEICRKSFITPSHLSRHLLLHESKKPYKCEVCGKSFTKTSTLKGHLSVHEGKKPYKCEICGKSFTKTSTLKGHLSVHEGKKPYKCEICGKSFNQTSTLKGHLLVHEGKKPHKCEVCGKSFTTTSGLRKHLLIHEGKKPHKCEVCGKRFTVTYGLRIHLLIHEGKKPHKCEMCRKSFITPSDLKRHLLLHEGKKPHKCEVCEKSFATTSTLKGHLMVHWGIKPYKCEICGKSFNQTSSLRSHLVVHEGKKPYKCEICGKSFKRTSHLKRHLMLHEGVKPHKCEVCGKSFATTSTLKGHLLVHEVRKPHKCEICGKSFAQASTLKGHLLGHEGKKPHKCGVCGKGFTWTSGLRKHLLIHEGKRPHKCEICRKSFIIPSDLRRHLLLHEDKKPYKCKVCGMLFTETSTLKGHLLVHEGKKPHKCEICGKSFTQTSSLKGHLLVHEGKKPHECEVCGKSFSWPSNLRRHLLMHEGKNPY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00995362;
90% Identity: iTF_00995362;
80% Identity: iTF_00995362;