Mvio046482.2
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060845.1:13240422-13270480[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 1.1 8.8e+02 1.9 0.1 22 47 58 83 55 88 0.86 2 22 0.3 2.3e+02 3.8 0.1 22 52 86 116 83 117 0.88 3 22 0.021 16 7.5 0.2 22 52 114 144 111 145 0.86 4 22 0.11 83 5.2 0.0 22 52 142 172 138 174 0.87 5 22 0.098 75 5.4 0.0 22 52 170 200 167 201 0.87 6 22 0.89 6.8e+02 2.3 0.1 22 46 198 222 195 228 0.86 7 22 0.15 1.2e+02 4.7 0.0 22 52 254 284 251 286 0.87 8 22 0.22 1.7e+02 4.2 0.0 22 52 282 312 279 314 0.85 9 22 5.5 4.2e+03 -0.3 0.0 22 48 310 336 306 340 0.81 10 22 0.21 1.6e+02 4.3 0.0 22 52 338 368 334 370 0.86 11 22 6.4 4.9e+03 -0.4 0.1 23 51 367 395 363 398 0.81 12 22 0.048 37 6.3 0.1 22 52 394 424 390 424 0.87 13 22 0.09 69 5.5 0.1 21 51 421 451 419 453 0.86 14 22 0.11 84 5.2 0.0 22 52 450 480 446 481 0.87 15 22 0.096 74 5.4 0.1 22 52 478 508 475 509 0.85 16 22 0.48 3.6e+02 3.2 0.1 21 52 505 536 502 538 0.86 17 22 2.2 1.7e+03 1.1 0.1 23 52 535 564 531 565 0.83 18 22 0.37 2.9e+02 3.5 0.0 22 52 562 592 559 594 0.85 19 22 6.4 4.9e+03 -0.5 0.0 22 49 590 617 586 621 0.80 20 22 4.3 3.3e+03 0.1 0.0 22 47 618 643 614 649 0.81 21 22 0.36 2.7e+02 3.6 0.0 23 51 647 675 643 678 0.85 22 22 3.6 2.7e+03 0.4 0.1 22 51 674 702 670 704 0.81
Sequence Information
- Coding Sequence
- ATGAATATCAATTCAGACATTAAAGAAGAACATAAGGATACTGATACCTGTTCACTTCAGTTGAAACAACCAGAAACTCATGGGGATAATTCCTATCATGCTCATGATCCTGAGTTAAAGAGCTTTACCCGGTTATCTTCTTTAAGGAGACATATTTtgctgcatgagggtaagaagccacataaatgtgaagtttgtgggaagagctttccCCTGGCTTACAATTTAAGGGTACATCTTTTGCTGCATGAGGGTAAGaggccacataaatgtgaagtttgtgggaagagctttacccaggtAGCTACTTTAAGGGTACATCTTTTGCTGCATGAGggaaagaaaccacataaatgtggaGTTTGTGGGCACAGCTTTACACAGCCACatcatttaaggagacatctttggatgcatgagggtaagaaaccacatcaatgtgaagtttgtgggaaaggCTTTACTCAGGCATCGGACTTAAAGAGGCATTTTTtgctgcatgagggtaagaaaccacataaatgtgaagtttgtgagaagggCTTTACCCAGGCATCAGACTTAAAGAGGCATTTTTTGCTGCATGAGGggaagaaaccacataaatgtgaagtttgtgagaggGGCTTTACCCAGGCATCTACTTTAAGGttacatcttttgatgcatgagcgtaaaaaacaacataaatgtgaaatttgtgggaaatcCTTTACCCATGCATCTGCTGTAAaggaacatcttttgatacatgagggtaagaaaccacataaatgtgaagtttgtgggaagagctttacctggtCATCTGTATTAAGGAGACATGTTTtgctgcatgagggtaagaaaccacataaatgtgaagtttgtgggaagaactttactcAGGCATCTactttaagggaacatcttttgatacatgagggtaagaaaccacataagtgtgaagtttgtgggaaaagctttacccgGGTATCTACTTTAAGgggacatcttttgatacatgagggtaagaaaccacataaatgtgaagtttgtgggaagagctttacccaggcatctactttaaggggacatcttttgatgcatgagcgaaagaaaccacataaatgtgaagtttgtgggaagaactttaccaGGGTATCTACTTTAAGGgtacatcttttgatacatgagggtaagaaaccacatcaatgtgaagtttgtgggaagcgCTTTACCCATACATCTAACTTAAAGAGGCATCTTTTGCTGCAtgagggtgagaaaccacataaatgtcaAGTTTGTGAGAAGGGCTTTACCCAGGCATCTACTTTAAGGttacatcttttgatgcatgagggtaaaaaaccacataaatgtgaagtttgttgGAAGAGCTTTACCCGAACATCTTCGTTAAGAATGCATCTTTTGctacatgagggtaagaaaccacataaatgtgaagtttgtggtaagagctttacaCATCCACATAATTTAAAGAGACATCTTTGGATGCATGAggatgagaaaccacataaatgtgaagtttgtgggaaatgCTTCACCCATTCATCTGTTTTAAAagaacatcttttgatacatgagggtaagaaaccacataaatgtgaagcttgtgggaagagctttacctggaCATCTGCATTAAGGAGACATGTTTTGTTGCATgatggtaagaaaccacataaatgtgaagtttgtgggaagaactttacccaggcatctactttaaggggacatcttttgatacatgagggtaagaaaccacataaatgtgaggtttgtgggaaaaactttacCCGGGTATCTACTTTAAGgggacatcttttgatacatgagggtaagaaaccatataaatgtgaagtttgtgggaagagctttacccatgcATCTACTTTAAGgggacatcttttgatacatgtgggtaagaaaccacataaatgtgaagtttgtgggaagagctttacccaggcatctaCTTTAAGGGGACATCTTTTGGTGCATGAGGGAAAGAAACCAcatcaatgtgaagtttgtgggaagagatTTACCTGGATATGTGacttaaggaaacatcttttgatgcacaaGGCTAAGAATCCACATAAACGTGAAGTTTGTAGGAAGAGCTTTACCCGGGCATCTACTTTAAAGGTACACCATTTGCAGCATGAGGGAGGCATACCTCCCGATATCCTCCCATCACCAGCACCACACACTATGCTCTACTTGTCTCCAATTTGCAATAAACTCCCCCTCAGGGTGGCTATGCTAGGCGAACTTGACCTCGACGCAGCTGGTACCGTCTTACTCAAGCTCCTGACCTACTTTGCTTCGCCAGTTCAACGGCAGAAGCAGACTCCCTCTTATCCGGTGATATTTTCCGCATCTGTGGTGTCATTCACTCCTGCTCTTTAA
- Protein Sequence
- MNINSDIKEEHKDTDTCSLQLKQPETHGDNSYHAHDPELKSFTRLSSLRRHILLHEGKKPHKCEVCGKSFPLAYNLRVHLLLHEGKRPHKCEVCGKSFTQVATLRVHLLLHEGKKPHKCGVCGHSFTQPHHLRRHLWMHEGKKPHQCEVCGKGFTQASDLKRHFLLHEGKKPHKCEVCEKGFTQASDLKRHFLLHEGKKPHKCEVCERGFTQASTLRLHLLMHERKKQHKCEICGKSFTHASAVKEHLLIHEGKKPHKCEVCGKSFTWSSVLRRHVLLHEGKKPHKCEVCGKNFTQASTLREHLLIHEGKKPHKCEVCGKSFTRVSTLRGHLLIHEGKKPHKCEVCGKSFTQASTLRGHLLMHERKKPHKCEVCGKNFTRVSTLRVHLLIHEGKKPHQCEVCGKRFTHTSNLKRHLLLHEGEKPHKCQVCEKGFTQASTLRLHLLMHEGKKPHKCEVCWKSFTRTSSLRMHLLLHEGKKPHKCEVCGKSFTHPHNLKRHLWMHEDEKPHKCEVCGKCFTHSSVLKEHLLIHEGKKPHKCEACGKSFTWTSALRRHVLLHDGKKPHKCEVCGKNFTQASTLRGHLLIHEGKKPHKCEVCGKNFTRVSTLRGHLLIHEGKKPYKCEVCGKSFTHASTLRGHLLIHVGKKPHKCEVCGKSFTQASTLRGHLLVHEGKKPHQCEVCGKRFTWICDLRKHLLMHKAKNPHKREVCRKSFTRASTLKVHHLQHEGGIPPDILPSPAPHTMLYLSPICNKLPLRVAMLGELDLDAAGTVLLKLLTYFASPVQRQKQTPSYPVIFSASVVSFTPAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00995400;
- 90% Identity
- iTF_00995400;
- 80% Identity
- iTF_00995400;