Mita019682.1
Basic Information
- Insect
- Metalampra italica
- Gene Symbol
- -
- Assembly
- GCA_949699065.1
- Location
- OX452998.1:4451782-4459194[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.0001 1.2 9.7 0.0 25 48 32 55 15 58 0.75 2 6 9.3e-05 1 9.8 0.2 25 48 107 130 87 134 0.74 3 6 0.78 8.8e+03 -2.7 0.0 14 20 295 301 293 303 0.82 4 6 0.24 2.7e+03 -1.1 0.8 11 34 315 338 307 351 0.72 5 6 0.00027 3.1 8.3 0.1 21 50 353 382 345 384 0.86 6 6 0.0016 18 5.9 0.0 21 48 381 408 378 413 0.88
Sequence Information
- Coding Sequence
- atgggCTGCTTATTTGACACCAACAATTTCTTTCATTTGAGTGATTGGACGGAGAAGGCTCGCTACACCCACGTCCGCGTGAAGCACGCCTCCACGCCGTGCGGCATCTGCTACGAGACCTTCGTCAACTCCACCGGCCTGAGGAACCACCTGGGCAGAGCTCACATCAAGACGTTCAGATGCGCCACGTGTGACGTGACGTTTGACAACAAGGACGCGATAACAACCCACATAAAGACGTCCCCCGGCGACGTCTGCGGACCACACATAAGGACGGAGAAGGCTCGCTACACCCACGTCCGCGTGAAGCACGCCTCCACGCCGTGCGGCATCTGCTACGAGACCTTCGTCAACTCCACCGGCCTGAGGAACCACCTGGGCAGAGCTCACATCAAGTGTGGCGAGAACTTTGCGGCGTCCGAGCTGGACCAGCTGGAGGAACACATCCGGAAGCGGCATCCCCCGCGGGAGAGACGACACAAAGTGgGCGCCTGGAAAAGATGCTGCGAATGCAAGAATTCAACGAGTGACCCCAAGGAGGCTGGGGGTAATGTTGAACATTATTGCCCCTGCCTGAGAGGGGACACGCGTGACTGCCAGTGCCCCAGCGGCGTGATTGGGTCGTGCAGCAGGAAGGGGGGGAATGCGACGAGTCGCCGCCACCAAGGGTGCTGCGTCGTCGACAGGCCGAAGGAAAAGGACAGGTGGACGTACTACAAAAATGGTGGTGACTGGAAAAGGTGCTGCAAATGCATGGATTCAACGAGTGACCCCGATGGGGCTGGGGGTAATCTTGAACGACATTGCCCCTGTACGAGTGGGATCACGCGGGACTGCCAATGCCCCAACGGCGTGATCCGGTCGTGCAACAGGGAGGGGGGGGATCCGAGGAGTCGCAGCCACCACGGCTGCTGCGTCGCTGCCAAGGAAAAACTGCTGGcgggggggcggcggcgccggcgccggggcTCCGGCCCCCAGACCTACCCATGCCCTGAGTGCTCCAAGTGTTTCAAAGCGATGTGCGTGCTGGAGATGCACGTGCGCACGCACACCGGCGAGCGGCCGTTCGCGTGCGCGCTCTGCCCCAAGGCGTTCAAACAGAAGGCCGCGCTCGTGAGGCACCTCAAGGTGCACACGGGCGAGAAGCCGTTCGCGTGTCCGGAGTGCGGGAAGACGTTCTCGCAGTCCAACTCGATGAAGGTCCACGTGGCCACCGTGCACCGCGGCCTGCCCGCGCCCTACAAGAGCAAGGCGCGCCGGCTCAAGGCGCTGCAGCGCTCCGCCCCCGCCTCGGACTCCGACGAGCAATAG
- Protein Sequence
- MGCLFDTNNFFHLSDWTEKARYTHVRVKHASTPCGICYETFVNSTGLRNHLGRAHIKTFRCATCDVTFDNKDAITTHIKTSPGDVCGPHIRTEKARYTHVRVKHASTPCGICYETFVNSTGLRNHLGRAHIKCGENFAASELDQLEEHIRKRHPPRERRHKVGAWKRCCECKNSTSDPKEAGGNVEHYCPCLRGDTRDCQCPSGVIGSCSRKGGNATSRRHQGCCVVDRPKEKDRWTYYKNGGDWKRCCKCMDSTSDPDGAGGNLERHCPCTSGITRDCQCPNGVIRSCNREGGDPRSRSHHGCCVAAKEKLLAGGRRRRRRGSGPQTYPCPECSKCFKAMCVLEMHVRTHTGERPFACALCPKAFKQKAALVRHLKVHTGEKPFACPECGKTFSQSNSMKVHVATVHRGLPAPYKSKARRLKALQRSAPASDSDEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00994533;
- 90% Identity
- iTF_00994533;
- 80% Identity
- iTF_00994533;