Mita019682.1
Basic Information
- Insect
- Metalampra italica
- Gene Symbol
- -
- Assembly
- GCA_949699065.1
- Location
- OX452998.1:4451782-4459194[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 4.6e-05 0.12 12.8 0.7 14 43 29 55 20 56 0.87 2 6 5.8e-05 0.14 12.5 0.7 14 43 104 130 97 130 0.86 3 6 0.015 37 4.7 0.0 21 44 132 154 131 154 0.92 4 6 5.9 1.5e+04 -3.6 1.0 18 28 247 257 246 269 0.67 5 6 0.25 6.1e+02 0.9 0.1 18 40 358 377 347 380 0.81 6 6 0.017 42 4.6 0.2 18 43 386 408 377 409 0.81
Sequence Information
- Coding Sequence
- atgggCTGCTTATTTGACACCAACAATTTCTTTCATTTGAGTGATTGGACGGAGAAGGCTCGCTACACCCACGTCCGCGTGAAGCACGCCTCCACGCCGTGCGGCATCTGCTACGAGACCTTCGTCAACTCCACCGGCCTGAGGAACCACCTGGGCAGAGCTCACATCAAGACGTTCAGATGCGCCACGTGTGACGTGACGTTTGACAACAAGGACGCGATAACAACCCACATAAAGACGTCCCCCGGCGACGTCTGCGGACCACACATAAGGACGGAGAAGGCTCGCTACACCCACGTCCGCGTGAAGCACGCCTCCACGCCGTGCGGCATCTGCTACGAGACCTTCGTCAACTCCACCGGCCTGAGGAACCACCTGGGCAGAGCTCACATCAAGTGTGGCGAGAACTTTGCGGCGTCCGAGCTGGACCAGCTGGAGGAACACATCCGGAAGCGGCATCCCCCGCGGGAGAGACGACACAAAGTGgGCGCCTGGAAAAGATGCTGCGAATGCAAGAATTCAACGAGTGACCCCAAGGAGGCTGGGGGTAATGTTGAACATTATTGCCCCTGCCTGAGAGGGGACACGCGTGACTGCCAGTGCCCCAGCGGCGTGATTGGGTCGTGCAGCAGGAAGGGGGGGAATGCGACGAGTCGCCGCCACCAAGGGTGCTGCGTCGTCGACAGGCCGAAGGAAAAGGACAGGTGGACGTACTACAAAAATGGTGGTGACTGGAAAAGGTGCTGCAAATGCATGGATTCAACGAGTGACCCCGATGGGGCTGGGGGTAATCTTGAACGACATTGCCCCTGTACGAGTGGGATCACGCGGGACTGCCAATGCCCCAACGGCGTGATCCGGTCGTGCAACAGGGAGGGGGGGGATCCGAGGAGTCGCAGCCACCACGGCTGCTGCGTCGCTGCCAAGGAAAAACTGCTGGcgggggggcggcggcgccggcgccggggcTCCGGCCCCCAGACCTACCCATGCCCTGAGTGCTCCAAGTGTTTCAAAGCGATGTGCGTGCTGGAGATGCACGTGCGCACGCACACCGGCGAGCGGCCGTTCGCGTGCGCGCTCTGCCCCAAGGCGTTCAAACAGAAGGCCGCGCTCGTGAGGCACCTCAAGGTGCACACGGGCGAGAAGCCGTTCGCGTGTCCGGAGTGCGGGAAGACGTTCTCGCAGTCCAACTCGATGAAGGTCCACGTGGCCACCGTGCACCGCGGCCTGCCCGCGCCCTACAAGAGCAAGGCGCGCCGGCTCAAGGCGCTGCAGCGCTCCGCCCCCGCCTCGGACTCCGACGAGCAATAG
- Protein Sequence
- MGCLFDTNNFFHLSDWTEKARYTHVRVKHASTPCGICYETFVNSTGLRNHLGRAHIKTFRCATCDVTFDNKDAITTHIKTSPGDVCGPHIRTEKARYTHVRVKHASTPCGICYETFVNSTGLRNHLGRAHIKCGENFAASELDQLEEHIRKRHPPRERRHKVGAWKRCCECKNSTSDPKEAGGNVEHYCPCLRGDTRDCQCPSGVIGSCSRKGGNATSRRHQGCCVVDRPKEKDRWTYYKNGGDWKRCCKCMDSTSDPDGAGGNLERHCPCTSGITRDCQCPNGVIRSCNREGGDPRSRSHHGCCVAAKEKLLAGGRRRRRRGSGPQTYPCPECSKCFKAMCVLEMHVRTHTGERPFACALCPKAFKQKAALVRHLKVHTGEKPFACPECGKTFSQSNSMKVHVATVHRGLPAPYKSKARRLKALQRSAPASDSDEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00994679; iTF_00994880;
- 90% Identity
- iTF_00994679; iTF_00994880;
- 80% Identity
- iTF_00994679; iTF_00994880;