Mequ005044.1
Basic Information
- Insect
- Merodon equestris
- Gene Symbol
- -
- Assembly
- GCA_958301585.1
- Location
- OY284413.1:43247569-43249068[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.42 5.6e+03 -0.9 0.1 22 45 216 239 209 246 0.77 2 8 0.0027 36 6.1 0.0 21 49 243 270 237 273 0.86 3 8 0.004 54 5.5 0.3 21 51 298 328 277 330 0.85 4 8 0.00032 4.3 9.1 0.1 21 45 326 350 322 358 0.89 5 8 0.0066 88 4.9 0.1 21 47 382 408 369 415 0.86 6 8 0.38 5.1e+03 -0.8 0.0 21 47 410 436 406 441 0.77 7 8 0.002 27 6.5 0.0 23 45 440 462 433 465 0.90 8 8 0.003 41 5.9 0.1 21 47 466 492 463 495 0.89
Sequence Information
- Coding Sequence
- ATGGCTGGCGAGATGACACAAATCGAATTCTCCGATATGGTCAAGGACGGTAGCTGCACTTTCTCCGATTGGCCAGATGAAGATGTGGAAGACGGCGACACGCACATGACGCAGTTCCTCTTGACTGAGGATATGATCAAGCAGGAGCCCGAATTCATAATTGGCGCAGATGATATTCAGGAAGAGCAGAAGATTCGGGCCTACTTGAAAAAGGTCAACATAGACGAAGACGACAGGAAGCAACTCAATTGGCTCACGTGTATGCTATGCGATGAACGTTTTCTATCAACCAAAGAGCTCTCGCTGCACGTGCAGAGTCATGCGAAAAAGGCCCTCAAGCAGGAGAGTGATGTAATGCCAGCACCGAAGGAGTACACCAATCGTCAAGCACCAAAAACCCCGTACACTGGATTCTCCCGACAGGAACTATTCCAGGACTACATTAACATAAGCGTTGAGCTGGACGGTAAGCCGACATACACCTGCAAGCTCTGTCCAAACAAGAACTACGCCCGGCAAGTATCGATTCGGAATCACATGCGTATCCACGAGAACCCAACGTATAAGGAGCGCTCCTGTCACATCTGCCACAAGACATTCCTCCGACGCGATACACTCTTAGTGCATCTTCGCACTCACACCAACGAACGAAGGTACAAGTGCAACGTCTGCGAAGCTAGCTTCACACATTCCAGCTCGTTAGTCTCGCACAAACGCATTCACACCGGGGAGAAGCCCTATGTTTGCGCCATTTGCAAGAAATCGTTCCGCGAATCCGGCCAACTTGGCGCTCACAAGAAGATCCACTTCGACAAGCTGTTGCAGTGTCCCAAATGTGACAAGAAATTCACTTCCAATAAAACGCTCCGAATCCACTGCCGAACACACACCGACGAACGTCCCTACCCGTGCAATATCTGCGGCAAGATGTTCCGTTGCACCACAAGTCTCACAACCCATCTCCGAGTCCATACCGGCGAAAAGCCCTACAAATGCGAGATTTGCTCCTACGCCACCAAGCAGTCCGGCTATCTGCGCACGCATATGCGAACCCATACCGGCGAGCGTCCATACAAATGCACCTACTGCGACAAGGCCTTCTCAGAGAAGAAACGTCTTGTGACTCACACACGAGGTCATACCGGTGAACGACCCTACAAATGCATATACTGCGATGCGGCCTTCGCACGAAACGACAACCTCAAATACCACCTAAGAACACATACCGGCGAGAAGCCATACGAATGCGGCGTATGCGGCAAACGATTCGCTCAGGGAACCGCTCTCACTATTCACACAAAGATCCATACCGGAGTCAAGCCGTACTCTTGCCCGCATTGCGACATGAAATTCCGACAAAGTGGAACTTTGGTAACCCATTTGCTGATGCACACCAACGAACGCCCATTCAAATGCGATCTCTGCGAAAGAGGCTTCAGGCAAAAGGCTCTACTTAAGCGACACGTAGCATCTGCCCATGGTAATAGTATAGTTCAGTAG
- Protein Sequence
- MAGEMTQIEFSDMVKDGSCTFSDWPDEDVEDGDTHMTQFLLTEDMIKQEPEFIIGADDIQEEQKIRAYLKKVNIDEDDRKQLNWLTCMLCDERFLSTKELSLHVQSHAKKALKQESDVMPAPKEYTNRQAPKTPYTGFSRQELFQDYINISVELDGKPTYTCKLCPNKNYARQVSIRNHMRIHENPTYKERSCHICHKTFLRRDTLLVHLRTHTNERRYKCNVCEASFTHSSSLVSHKRIHTGEKPYVCAICKKSFRESGQLGAHKKIHFDKLLQCPKCDKKFTSNKTLRIHCRTHTDERPYPCNICGKMFRCTTSLTTHLRVHTGEKPYKCEICSYATKQSGYLRTHMRTHTGERPYKCTYCDKAFSEKKRLVTHTRGHTGERPYKCIYCDAAFARNDNLKYHLRTHTGEKPYECGVCGKRFAQGTALTIHTKIHTGVKPYSCPHCDMKFRQSGTLVTHLLMHTNERPFKCDLCERGFRQKALLKRHVASAHGNSIVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01395957;
- 90% Identity
- iTF_00241666;
- 80% Identity
- iTF_00991995;