Mmel132488.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010001379.1:429523-431451[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.3e-10 1.1e-07 34.9 0.0 4 41 17 54 14 57 0.90
Sequence Information
- Coding Sequence
- ATGGCATCTAAAGTAAAAGGGAAGGCTAGGCAGGCGTGGGATAAAAGTGCAATGGCAGATGCAATTAAAGCTGTGCGAGAAAAGACAATGGGCTTTTTAAAAGCATCGAAAACATACGGAGTACCCAAAACTACACTTTTACGATTAACAAAAACAGAAAATGAATCACTTTGTGATATAACTAACCTCAAACTTGGCAGAAAATCGACGTTGCCTACTgaattggaggatgagctatctaattatattttagaaacggaaaaatcaggatttggtctaacacgcagggacataagatctttggcttaccagttagcgaagaaaaacaacatagagcactcgttttcagaagctaaagaatctgcaggcagaacatggttgaggttattcctcaagcgccatcctaacctatcatttcgccgtccaacgggtacatcaatatcaagaatgaaagatttcaacaaagaaaattatcctgcgactaatgtttataacgtggacgaaactggtgtttcagtcgtgccatcaaaaatgccggagatattggcacttaagggcaaaaaacaaattggaactgcaacttcagcagaacgtggatcaacagttacttgtgtcatatgtatgagtgcaggtggcacatttatcccaccaatgttgatatttccaagaaaacgggataatccattactgatgaaaggtgctccacctggttctattcatgcctgtcatccatcaggatggatacaattagaactatttactcagtggttcgagcactttttacagcacgtgaaaccaactgctacatcgccggttctccttgttttagatggccatgctagtcacactcgtaacatcaaggtggtggatttagcaagaaaaaatcacgttagcttattgtcgctgcccccacactctagtcataaaatacagccgcttgataaaacatttatgggtccattaaaaaagtacttgacagaagaaattcgaaagtgggtacgaattcaaccacaagcagtgacacattatgacatagctgaattatttggtcaagcctacataagagctcagcgtgcagaactggctataaatggttttcgtgcgactggaatatatccaattaacagaaatgtcttcgaagattatgactttattgAGGACGACTGTCCAGTAGTAGAAGAATCTGTTAATGATCCACCACGTGATAGGATAACACCAGTTATTGAAAATGGTGATAACAATTTTCCTGAGGCAGATGCTGTTGAAGCTCTGGAAGCTCACTCCACACCTATTTCTACTCTGACATTTGACGAAAGTCACCTTCCAAATCTACAATCCAAGGAACCGACAACCACCTTGAATGATTCAGTGGCTGGTTCCTCCACATCAGCTAGAATATATTTGTCACCAAAAGTGTTGCAACCCATACCGCGTTTGAAGAAAACTGTCACAGATTTAGAAACATCGATAAAAAGGAAGGAGGAATCAGATAAATTAAAGAAAAAGAAACCGTTGAACATTAAAAATAAATCAAAGAAAGCACCAAAGAAAAAAAGCATCATCTCAAAATATAAAGAATCATCTTCTGAAACTTCTAATCAGAGTGACTATTTAGTTGATGATAGCACAGACGAGAGTCCCGACCGCTCTCAAAATGAAAACGCCAACTGCTTGTATTGTCATGGGCTTTTTTCTGAAGATGTTCATGGAGAGAAATGGATCCAATGTGCTTCTTGTAGGCGATGGGCTCATGAAGATTGTGCTGGCATAGAAGATGTGGTCGACTTCTATGTTTGCGAATTTTGTACCAATGATTCATCTAAGCCCTGA
- Protein Sequence
- MASKVKGKARQAWDKSAMADAIKAVREKTMGFLKASKTYGVPKTTLLRLTKTENESLCDITNLKLGRKSTLPTELEDELSNYILETEKSGFGLTRRDIRSLAYQLAKKNNIEHSFSEAKESAGRTWLRLFLKRHPNLSFRRPTGTSISRMKDFNKENYPATNVYNVDETGVSVVPSKMPEILALKGKKQIGTATSAERGSTVTCVICMSAGGTFIPPMLIFPRKRDNPLLMKGAPPGSIHACHPSGWIQLELFTQWFEHFLQHVKPTATSPVLLVLDGHASHTRNIKVVDLARKNHVSLLSLPPHSSHKIQPLDKTFMGPLKKYLTEEIRKWVRIQPQAVTHYDIAELFGQAYIRAQRAELAINGFRATGIYPINRNVFEDYDFIEDDCPVVEESVNDPPRDRITPVIENGDNNFPEADAVEALEAHSTPISTLTFDESHLPNLQSKEPTTTLNDSVAGSSTSARIYLSPKVLQPIPRLKKTVTDLETSIKRKEESDKLKKKKPLNIKNKSKKAPKKKSIISKYKESSSETSNQSDYLVDDSTDESPDRSQNENANCLYCHGLFSEDVHGEKWIQCASCRRWAHEDCAGIEDVVDFYVCEFCTNDSSKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00987722; iTF_00987786; iTF_00987759; iTF_00987798; iTF_00988030; iTF_00988096; iTF_00987806; iTF_00987813; iTF_00987802;
- 90% Identity
- iTF_00987722;
- 80% Identity
- -