Mcix030463.1
Basic Information
- Insect
- Melitaea cinxia
- Gene Symbol
- -
- Assembly
- GCA_905220565.1
- Location
- HG992214.1:13238685-13250652[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0032 0.35 12.2 1.0 3 23 207 228 206 228 0.96 2 22 0.031 3.3 9.1 0.6 1 22 603 624 603 624 0.95 3 22 2 2.1e+02 3.4 0.3 1 22 666 687 666 689 0.83 4 22 0.18 20 6.7 1.0 1 20 698 717 698 719 0.80 5 22 0.004 0.43 11.9 0.1 3 23 769 790 767 790 0.96 6 22 0.0058 0.62 11.4 3.8 1 23 796 819 796 819 0.94 7 22 0.084 9 7.8 0.0 1 23 845 868 845 868 0.90 8 22 0.013 1.3 10.3 3.4 1 23 873 895 873 895 0.97 9 22 0.002 0.22 12.8 0.1 1 23 901 924 901 924 0.95 10 22 0.0007 0.074 14.3 1.3 1 23 937 959 937 959 0.98 11 22 0.00012 0.013 16.7 1.8 1 23 1002 1025 1002 1025 0.97 12 22 0.00084 0.09 14.0 1.3 1 23 1085 1108 1085 1108 0.96 13 22 0.0002 0.022 16.0 2.3 2 23 1128 1150 1127 1150 0.96 14 22 0.058 6.2 8.3 0.1 2 23 1156 1178 1155 1178 0.93 15 22 0.0066 0.71 11.2 0.2 1 21 1222 1242 1222 1243 0.95 16 22 0.00082 0.088 14.1 0.6 1 23 1253 1275 1253 1275 0.93 17 22 5.9e-05 0.0063 17.7 0.3 2 23 1363 1385 1363 1385 0.93 18 22 1.2e-07 1.3e-05 26.2 1.1 3 23 1392 1412 1391 1412 0.98 19 22 0.0014 0.14 13.4 2.3 1 23 1428 1450 1428 1451 0.95 20 22 0.063 6.7 8.2 0.0 1 23 1472 1494 1472 1494 0.98 21 22 0.018 2 9.8 0.6 1 23 1500 1523 1500 1523 0.95 22 22 0.00017 0.018 16.2 0.4 1 23 1531 1554 1531 1554 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTGAATTATGATAGTGTTTGTAGACTGTGCTTGTCATCTCAGTGCGAATTACTGCCGATATTTTCTACCACCAGTTCGGATGACTCGGAACCTCCTGTCCTCGCATCTAAAATCAAAGATTGCGTGTCCGTACAGATAAGCGAAAATGACGAACTGCCAACCAATGTCTGCAGGAAATGCATTGACAATGTTAACAACTGGTTTATATTTAAGTCAGTATGTGAAAGGGCACAAAATAAGTTACAGACATTAATTAACAAAGACAGCAGCCAACTGGATGAGGTCAAAATAAAAAGTGAACCTTTATCAGATGAAGCTTATGATGATGGAGTGGTTATTGATGGATCATATCCAGATAGTGAGAATGCAGGCTCATCAGCTAGACTGCAGCCTGAAGGGCCACCTATTTTGGCTTCACTTGGACTTACACCGAGAAGTGATAAGGGTATGGAGAGCGAAAAAGACGAAGATTACGAAGGTGAAGATGAAATGACAGAGCAACAAACATTTACAAATATGCCTAACATGCCAGAAGTTTCTATTACCGTTATGCGCCCTACAGGCGAAACCCTTCATGCTCGCCAAGGTATTCAACAGCTTGCTTCTAAGGATTGCTTAGTGTGTGGTCGATCCTATAGATACTCACATAATGCTCGGCGTCATGAACTTACAGCACACAATTTCGATAGATATACAAATAAAACTGCAAATAAGAAGTCACATTCACATATGCAACCGAAATTTAGACCAAATCCTTTCAATCCTAAAGCAAGATTAATGCCAAATCCTATAAGCCACAAAATGCAACTTCATTCTAAATCAATGCCCAATAGAATGATGCCTCAAAAGATTGTCACTCCACCAAAGCCAATACCAATTAAAACTAATAAGGCTCAACAGAACAACTTACCATATCCGCTTCGTATAAAGGCTCTTAAAGACTTACAAATTAAGAAAAAAGAACCGCAGATATTGAAAACATTACTTACTGCCAAACCAGAAGTCCTGGTATCTGAACCTGAAATAATCAATTCGGGGCCCGAGAGTCCAGAAACATTAATTTCGGAGCCAGAGATAGCCTCTTTTCAAGTTGAAACGATCTTGTCAGAACCAGATGGCTATGTAAACCAACATGATGACGAAATTGATGAAGATAATAACCAAGGACAGAATTATGATACTGTTGATATGGATTCAGAGAATGAAATTGAAATAGCTCGACAACAAGCAAATGACGATGTCCAAGGTGATGAACACCTTGATGAAAACGATACGAGAGATAATGGACGCGATGAAAATAATATTGAGGACGTTAATGAGGATAACGAGAAAGAGCATCGCGATGATAATGGTGAGAGTCAAGATAATATGGACACGGAGAACAATATTGACGAAGAAGCAGACAATGTCGATAATACTAAGGAAAATGACGAAAATGGGGAAAATGAGGAACTTAACCAGGAAGACAATGAAGAAGACGATGATTTACCTCCCATGACCATTGCACCTGTTGTTGAAATAAACGAGGATATGCAAACAAATTCTTATAATAGTGATGGAAATGAGGAAGAACTTGATGAAACTGTTGATCCTAATGATACAGTTGACGGCGATGAAGCTGAAAAAGATGTTGATCCGGATAAAATTTACATAACTAAAACCCAGAGAGATTTTATTCTCAAGTACCGCGATATTATTGAACAAATAAATACTAAACGTTGTCTCTGTTGCCACAAAGAACACCCACGTCGAAAAGCTGTCATTCAACATCTACAGAAAAATGGACATAAAGTTCCTAAGCATACATGTTATAATTGTGTGGTAACCTTTACACACATAGGAGCATTGCTTAGTCATATGAGATCCAATACTTGTACTGATCTTTGGAAAATAATTTATAAAGAAAATGGTATCACTGATGATATCGTATTGGAAGACGAACCCAAAGACGTAAAAGTCCAATACAAAGATATTCTTAATGCTAGATCGTACGTGTGCAAGTTGTGTCCAGCCAAATTTCAATTGAAGCAATTTATAATGAAACACGTTCTTGATGTACATGAAGACGGTCAATCTCGTTTTCCACATTCTTGTGTGCACTGTGGCTTGCGATTCAAGGATAAGAGCATAGGTAAAAGACACATTCGTAATGGCGATTGTACAGTCGAAATTTGCTGTGAATTATGTTCAGAAAGGTTTTTAAGTTTGCAAGATTTTAACGAACACGCCGTAGCCATTCATGCTGGCAGTTTTGATCCTGACAATCAGAGTAAATGTGTCGATGGCCGACCTACAGATTGCCCTATATGCGGAAAGAAGAACAGTAGCTATCCGAATCTAGTGAAACATTTAAAAATTATACACAATGAGGAAAAACCACATCACTGTCAGCACTGTGATGCTAAATTTGAACAAACGGCCGATCTTAATAAACATATATATGTCGAACATTCTGATAGGTCATTAGGCATGCAAACCATTGAACCGGATATATCTCTTGTAAAAGAGGAAGCAGAAGAGTATCATTATTCATGCACTGAATGTAATGCTATATTTGAGACGGTCGATGCTTGGACTGATCATCAGGTAGCTGAACACAACCAAGTTGCCCATCACTGCGATCAATGTGAAAAGAAGTTTTTGCGTCCATCAGAACTGGCTGAACATAAAAATACCCACTTAAGAGTTAAATTTTACCCTTGTAACATTTGTCCCAACTCATATAGTACACCGCAAAAATTGTCGGAACATGTACAACAAGCTCACCCTGGAGCCCCTATGCGCACGCCTGGTGAATCTGAATTTTATTGTGACATATGTATACGATCTTTCAAAAGCCGCCAGGCTTATTCTAACCACATGCGTATTCACTCTAAAGTGCCTACAACTAATAGAAAACCTGGCGAAACAAGAGGTTTCGGACCTCAAATTATTGGAAAACCAATTCGTCATTTCTCTATGCAGCCTGGCTTTAGTCCGTACGTACCAAATGCACCTTACTCTTGTGATATTTGTGGCAAAGGATTTATGCACAAGAAAAACATATGGAAACATAAAAAGGTTCTCCACGCAGATCTTCTTAATGACAGGAACGATAGTGAAGAAAACACTATGCAAGCTTCCACAGAAGAAGATGAATACAATGTAGATGAAAACGGCGCAATTTTATCGACTCCCCAATTTAATAGTTTTAATTTTACAAATCTTACTAATAATATGCAACAGACATCACAAGACGCCTTGCCGTATTCTTGTGAAATATGTTACAAAAGATTCCCGCTAAGGACTAGTCTATGGAAGCACAAACGCGCTAAACATGGTATTATTAATACAGCCTCTGAAACACAAACACAGTCTTCGGGTGAAGGTAGATCGAGCTGTACTATTTGTAAAATAACTTTTTCAGACAAAAAGTCGTATTATAGGCACAGAAAAACGATCCATAAATCTACAGTTCAAATGTGTAAAATATGCGGAAAACCTCTTAATTCAACTTTAGAGCTTTATGAACATCTTAAAGCGGCTCATGCACGAGAGTTGTTGGGATACAATGCTAATCAAGGATCTAGTAAATCTCAAGACATGGGTCAAGAGATGGATGTAGAGTATGATGGAGACCAAGATTCAGCTGATCCCACCCAAGACTACCAAGCCCGTTATCCATGCGACACCTGTGGCAAGCAATTTGTCGGATTATTGGCTCTTCAAAATCACCAATGTATCAACCAGCTACAAAGCCAACCTCAGACATTTGATTGTGAAATTTGTCATAAGAGTTATACTTCTATTGCTGCATTGAAGAGCCATCGGGGTTGGCACTTGCGTTCTCCCGACGGTAAAGCCGCAGCCAATAACACTGGCCTTTGGATGCCTCAGAACAAAGTAACCAGTAAAGTGAGCAAACATGAAGTAGTAGAGACAGTCCCTAGGGCACAGACATCGACACCGGCGTCTATAGCTAAACGGAGACTACCTCCGGAGGTAGAAGTGACAGTCGTAAATCCTAATAAAAAACTTCGGTCGGACGACTCAGTCGAAATGGACCACCAGAACAATTTATCAGGTGGAGCCGAGGACAGGTATTGCAACATTTGTGACAAAGAGTTCACAAAGCGAGCGGCTTACCAACGTCACATGGACGAAGTTCACCAACCGAATTCCGTCTTTTGTCCCGTCTGCGACAAGAGCTTTACGAGGAAATCAACTCTGATCGTGCACATGAAGAAGCACTACGAAGGTGGGGAAGGGAGTTCCGCGCAAATGGATGACGACTTGCATACTTGTGACGTATGTGGGGCCCAATTCGAAAGCTCGAAGGCTCTGAATTCCCATCGGACTATGCATCATGGAGATGAATCAGCGGAGTCCGAGGACGATGGGGGAGCCCCCGCGGCGCCGCCTGGAGAGTTTACATGCGGTCAGTGTGGTGACGGTGTGGCCACCCCGAGGGACCTCATAGCCCACCGATCAATGCACGCCACCCCCACAAAATTCTTCTGTAACATTTGCAAGGTTTACTTCGCTCGAGCTCTCGACTTATCGTCTCACACGCGAGCCAGGCACTCTGATAACGAGAAAGTATTCTTCCCCTGTGCTATGTGCGACCGATTCTATATGAATAAGAAGAGTCTGCAACGGCACATCGAGATGGCGCACTGA
- Protein Sequence
- MSVNYDSVCRLCLSSQCELLPIFSTTSSDDSEPPVLASKIKDCVSVQISENDELPTNVCRKCIDNVNNWFIFKSVCERAQNKLQTLINKDSSQLDEVKIKSEPLSDEAYDDGVVIDGSYPDSENAGSSARLQPEGPPILASLGLTPRSDKGMESEKDEDYEGEDEMTEQQTFTNMPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHNFDRYTNKTANKKSHSHMQPKFRPNPFNPKARLMPNPISHKMQLHSKSMPNRMMPQKIVTPPKPIPIKTNKAQQNNLPYPLRIKALKDLQIKKKEPQILKTLLTAKPEVLVSEPEIINSGPESPETLISEPEIASFQVETILSEPDGYVNQHDDEIDEDNNQGQNYDTVDMDSENEIEIARQQANDDVQGDEHLDENDTRDNGRDENNIEDVNEDNEKEHRDDNGESQDNMDTENNIDEEADNVDNTKENDENGENEELNQEDNEEDDDLPPMTIAPVVEINEDMQTNSYNSDGNEEELDETVDPNDTVDGDEAEKDVDPDKIYITKTQRDFILKYRDIIEQINTKRCLCCHKEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFTHIGALLSHMRSNTCTDLWKIIYKENGITDDIVLEDEPKDVKVQYKDILNARSYVCKLCPAKFQLKQFIMKHVLDVHEDGQSRFPHSCVHCGLRFKDKSIGKRHIRNGDCTVEICCELCSERFLSLQDFNEHAVAIHAGSFDPDNQSKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHNEEKPHHCQHCDAKFEQTADLNKHIYVEHSDRSLGMQTIEPDISLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCNICPNSYSTPQKLSEHVQQAHPGAPMRTPGESEFYCDICIRSFKSRQAYSNHMRIHSKVPTTNRKPGETRGFGPQIIGKPIRHFSMQPGFSPYVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLLNDRNDSEENTMQASTEEDEYNVDENGAILSTPQFNSFNFTNLTNNMQQTSQDALPYSCEICYKRFPLRTSLWKHKRAKHGIINTASETQTQSSGEGRSSCTICKITFSDKKSYYRHRKTIHKSTVQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGSSKSQDMGQEMDVEYDGDQDSADPTQDYQARYPCDTCGKQFVGLLALQNHQCINQLQSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNTGLWMPQNKVTSKVSKHEVVETVPRAQTSTPASIAKRRLPPEVEVTVVNPNKKLRSDDSVEMDHQNNLSGGAEDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYEGGEGSSAQMDDDLHTCDVCGAQFESSKALNSHRTMHHGDESAESEDDGGAPAAPPGEFTCGQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01092294;
- 90% Identity
- iTF_00986469;
- 80% Identity
- -