Basic Information

Insect: Melipona beecheii
Gene Symbol: RREB1
Assembly: GCA_032399605.1
Location: JAUCMO010000243.1:7513292-7519799[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.073 6 7.7 0.2 1 23 69 91 69 91 0.95

2 16 2.8e-06 0.00023 21.5 3.5 1 23 105 127 105 127 0.98

3 16 1.3e-06 0.00011 22.6 1.2 1 23 133 156 133 156 0.98

4 16 0.1 8.3 7.2 0.2 2 23 260 283 259 283 0.93

5 16 0.21 17 6.2 2.9 2 23 289 311 289 311 0.94

6 16 1.9 1.5e+02 3.2 0.6 1 19 367 385 367 387 0.89

7 16 0.2 16 6.3 0.1 1 23 499 521 499 521 0.96

8 16 2.8e-05 0.0023 18.4 0.3 1 23 530 552 530 552 0.98

9 16 0.0012 0.1 13.2 2.8 1 23 558 581 558 581 0.97

10 16 0.00065 0.054 14.1 2.8 1 23 961 984 961 984 0.96

11 16 0.00049 0.04 14.5 0.1 3 23 1253 1273 1251 1273 0.97

12 16 0.25 20 6.0 6.9 1 23 1279 1302 1279 1302 0.97

13 16 0.0041 0.34 11.6 2.2 1 23 1340 1364 1340 1364 0.97

14 16 0.47 38 5.1 4.8 1 23 1448 1471 1448 1471 0.96

15 16 0.011 0.91 10.2 0.4 2 23 1522 1543 1521 1543 0.94

16 16 1.3 1.1e+02 3.7 8.2 1 23 1549 1571 1549 1571 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.073	6	7.7	0.2	1	23	69	91	69	91	0.95
2	16	2.8e-06	0.00023	21.5	3.5	1	23	105	127	105	127	0.98
3	16	1.3e-06	0.00011	22.6	1.2	1	23	133	156	133	156	0.98
4	16	0.1	8.3	7.2	0.2	2	23	260	283	259	283	0.93
5	16	0.21	17	6.2	2.9	2	23	289	311	289	311	0.94
6	16	1.9	1.5e+02	3.2	0.6	1	19	367	385	367	387	0.89
7	16	0.2	16	6.3	0.1	1	23	499	521	499	521	0.96
8	16	2.8e-05	0.0023	18.4	0.3	1	23	530	552	530	552	0.98
9	16	0.0012	0.1	13.2	2.8	1	23	558	581	558	581	0.97
10	16	0.00065	0.054	14.1	2.8	1	23	961	984	961	984	0.96
11	16	0.00049	0.04	14.5	0.1	3	23	1253	1273	1251	1273	0.97
12	16	0.25	20	6.0	6.9	1	23	1279	1302	1279	1302	0.97
13	16	0.0041	0.34	11.6	2.2	1	23	1340	1364	1340	1364	0.97
14	16	0.47	38	5.1	4.8	1	23	1448	1471	1448	1471	0.96
15	16	0.011	0.91	10.2	0.4	2	23	1522	1543	1521	1543	0.94
16	16	1.3	1.1e+02	3.7	8.2	1	23	1549	1571	1549	1571	0.98

Sequence Information

Coding Sequence: ATGATACCAGATCGcgctatttttcaaaatgatatCGTTCTCGGAAGTGTAGCCTCGGAACACAGTAGCCTTCAGGATCGAAAAGTCTTGATAAATAAAGACGATTGTGttaCTGTCAAAAGTGGCTCCGGGCAAAGATCTGAGAGTGAAGCGCAAGCCGATGCTGCCTCGTCCCCATCCAGTGTTGAACTACCGGAAAGCGCGCACTCGTGCCCGGCCTGTTCGGCCGTGTTGCCCACCTCCGGTGACTTGACGAACCACATACACGGCCACAACTCGTCTCGCAGCACGGACTGCAGCGGCGAGGACGAGTACTGCTGCAACATGTGCAACAGGGTGTTCAGCTCTTCCAGTTCCCTCAACAGGCACTTGTCGATGCACGCAGGTGCCCGGCCGTACAAGTGCAAGTACTGCGAAATGGCGTTCACCACGAACGGGAACATGAACAGGCACCTGAAAACGGCGCACAGAGGCGCGTCGCCGCACAGCTACACGGATTCGGAGGCGAGTACCAGCGGCAGTAACAGCAGCGACTCGGAGAAATCCAAGAGGCGACATCTCGAGGAGTATAACAACAACGAGATCACGAAGAGGAACTCGCCGGATTACGTCGAAGGGCACgaggagagggaggaggacgaggaggagatGCCCTCGTCGTTGCCAGCGAAGAGGAAATGCTCGAGCGACAACGAGACGCAGAAGAGGCACAAGATCCTTCTGAACAACTCGAGGACGGAAATGAAGCCAAGACCGGACGACGGTCAGAACATCTGCACCTGTCCGGTGTGCGGCAGACAGGATTTTGGCAGTAGCGCACTCTTGGAGGCGCATCTCGAACGAAATCACCCAGAGTTCCCCGCGAAGTGCGACAGTTGCAACCTGTCGTTCAAAAATCACCGGGTGTTGAATCTCCATCGGTTCATGATACACTTCGCGGAACACCCGGTGGGGAATACGGCGAGGAACTTGCGAAACTCCGTGGTCGGTTTCAACGATTTGACGTTCGTCGACTTCTCGTCGGGCAAGTTCCCAGCGATAGCCAGGGCCGTGTGCGAGCAGTCTCTTCACCGGCCGGCCTCCGGCGAGGTGGCCAAGTTTCAATGCTCCAAGTGTCTGCGAGCGTTCCCTTGCAGATCGGCGTTGGACGCCCACGAGACCGACTGCGGCACCGCGAACTCCCAGagtcgaacgaacgacggCCAGTCGAGGAGGGACGACTTTTTCGCCGGCCTGGACCTGCAGAACAAGGCCGCGCTGACGGAGgcgaaagaagggaaagaCCTCGCCGACATACAGAGCATCATATCCGTCACGTCTGGACCGATACTGCAAAATTTCCCACGATCGGACGCGAGCACGCCCGAAAACGTGAAATTCAATCCAGGCGCGAGCTCTTCGGGCTCGTCCGGCACGTACTCCTCCGAGTACCACGAGGAAGAGGCACAGGACGCGTTCGCCGCGGAATTCCGAAGGATGAAACTAAAAGGGGAGTTCCCTTGCAGGCTCTGTTCCGCGATATTCCCGAACCTGAGGGCGTTGAAGGGACACAACAGGGCGCACATGGGAGTGGGACCAGGCATGCCTTACCCGTGCAACATGTGTCCCTACACCAGCACCGACAAGGCAACGCTGGTGAGGCACCTGAGGTCCCACAACGGCGACAGACCGTACGAGTGCTCCCTCTGCAACTACGCGTTCACGACCAAGGCGAACTGCGAACGCCACGTGCGCAATCGCCACGGGAAACTGACCCGGGAGGACATCAAGAGCGTCCTCATCTACCACCCGAACGAGGACTCGACGAACGAGAACGTGGGACGAACCTCGCCGAGAGTCGtgaaggacgaggtgaggaaGAGCTTGGTTTTCCCGAGCGAGCGAGGCGAGCTTCATCACCAGGCGCAGGTGCACTATCCTCCCCCGGTCAGGGGAGAGATCAGGATAATAGAAGAAGCGAAACTGCACAACGCTGCGATGGGGGCGGCGGCGCATCACGGTGCGAATCACTGCGACAAGAGCGAGACGTTCTCGAGGCTCGGCCAGCAGCACGTGGAGATGATCCAAGCACGCGGCGACGACGGGAAGCCCGGCCAGGATGCCAAGTCGAACAACTCGAAGCTGGACGATGACCTGGAATCGAGATCGTCCGAAGGTAGCGTGTCTCTAGTCACCGAAACGAAGTCAGAACCGCACCAAAGAGTACAATCTAGTCCAATGAACTTGAAGAAAGTTCTGAACCTGTCTGAGACGTCCGGCGAGGACGGCCCGCTGGACCTGTCCATGGACGTGCTGGATCTCAGCAAGAAGTCGAGAAACAAGGACGAGAACGACTTCGCCGCGTCCCACGAGCAATACGGCAAAAGCCAGAAGGATCTGTACAACGCTGCCAGCCACTTGTTTCTCACGGAGGCATTCCTGAAGGCTGGCCACGGCAGCTCTCAGCCGACCTCGCTCGAGGCTCTGTACGCCAACGCCATTTACAGAAACTTCGGCACGTACCCAGCCGGCGTTGGCGCTGGAATTCTGCCGTCGTACATGTTCAGTCCTCACATATTCGGCCAGGACTTCGCACTGAAGGACAGGTTGGAGAAAGACTTGGTCAGAGGTCTGCAACTGACCAGCGGAGGCACTCTGGTGGAGCCGTCGACAAGCAGCGCTGGGTTCAGCGCGTACTCGCAGAACAGAGACATGAATCCTCAGTCGGCTGACCAGAGCGAATACGCGAAGCTGATATCTTCCAAGATGGCGAGCAAAGGAGTAACGAGCCGCGACAAGCCGGACAAcatgtcgtcgtcgtcgaactCGGTGAAAATGGTGATCAAGAACGGAGTGCTGATGCCTAAACAGAAGCAACGAAGATACAGGACCGAGAGGCCTTTCTCTTGCGAGCATTGCTCGGCGAGGTTCACGCTGAGGAGCAACATGGAGAGACACATCAAGCAGCAGCACCCTCAACACTGGAGCCAAAGACCCAGGGGTGGCCACTCCACGAGAGGAAGACCTCCTACCAATCACTCTACGTTGCTGCAAAACCTCGGACAGCCACAGGCTGCTCCACAGGTTCCCCAATCGTACACCAACATTCTGCCAAAGAGCGAAGAATCGACAGAATTCCCGAGGCATTCCATCTCCGACCAGGTGAAATACGCGATCCTCACGCAGAAGCTGAGAGCGAACAAGATCGAGGACAACGACTCCGAGGAAGAGTTAGTGATAGACGAAGGCCCGCAAGAGAAGGAGTGTCAAGGAGAGTCTCAGGATCAGAAGGAGAAAAGCCTGTTAAGGGGGCAGTTGGAAGGTGGAGAGTCCGCGAAGGAGACTGCGGCGAAGGAGTCGTCGAGAACCGACTCGAACGAGACTGAGCCTGAGAAGAAAGCGGACGCGAGAGAAGAGGCGAGAGGGGGGCAGACCTCTGCTGAGACAGACCACGATAGATCGGCCGACAGGGATCCTCCTAGCAGAGCGTGCAAAACGGGACCGGTCGAGGTGAAGAGCGAGAAAACGGAAGACGAAAACACTGACTTGGCTAGCGTCTCGGAGTTATTGGACAACGCGTGCCAGCAGTATCCGGAGTTTCAGTCGCAATATCTGAGCGACGAGGAAGGTCTGGTGGCGTCGAACAGCGAGTGCCACAATTCGGGCAGCGACGAGAAGTCCGACTCGGTGAACTCGGCCAACTCAGTGACCGCGccgtcgaagaaaaaaaaaaaaaaaaagaaatcagcgTACTCGATGGCGCCGAACAAAGTGATCTGCCCGTACTGTCAACGCCCGTTTCCCTGGACGTCGTCTCTCAGGAGACACATTCTCACCCACACGGGACAAAAGCCCTACCAGTGCACTCATTGCTCGCTTCTGTTCACCACGAAGTCGAACTGCGACCGTCACTTGCTGAGGAAGCACAAGACAAACCCTAACAAAGTGCACAGAGCGAGAAACTCCTCTTCGCCGGACTCCCAGCCGGTGATCAACAGCAACAACTCGTTCTCCACGAGGAACGTGCCGGAAAGACCGTACAAGTGCAATCAGTGTCCCAGCTCGACGTTCTCGACGCTGGGAAACCTGAAGAAACACCGTTCGACGAAGCACGCTCGAAAGTTGAAGTCGCGGTCGGACACACCGTCCAGCGAGCCTCAGAACAGCCCGCCGGAGTGTCCGAAGCAGAACAACGAGCAAACGGACTACGACAGCCAATCTTCGAGCGTGTCCGAGGGTCCGCTGGAACCTTCATCCGTGGCGACGCTTCCCAAATCCAACTCCAATACCTCCTCGACCAACGACACGGTCAGGTCGAGAAGATCCTCGCCGCGAACGTCGCCCGGGCCTAGCGACGTGCCGTTCAAATGCCACCTGTGCGACTGCGGCTTCGCGGACCGCCAAGATTGCCTGGAACACATCAAGGTGAATCACAAAAGATCCTACGAGATGCTGGTGGCGAAAGGAGCGTTGGACATGGACATCGACGCGATGGAAGAGCAGCAACAGCCACCGCCGCAACACCAGACCAGCGACGgggaagagaaacgaggacGTTTTCCGGACTACAGCAACAGGAAGgTGGTCTGCGCTTTCTGCATGAGGCGGTTCTGGTCCGCGGAGGATCTCCGACGTCACATGAGGACGCACACCGGCGAACGGCCGTTCTCCTGCGACATTTGCTGCAGGAGATTCACATTGAAGCACAGCATGTTGCGGCACAGGAAGAAGCACGAGTCCATCGACTCGACGATGTACGTCGGCACGAGCGGCGACGAGGAGAACTCGCCGTCGCAGCCGTCTACCATCGCACCGCACAgtcaacaacaacaaatgCTGCTAACGGCGAACAACGGGAATCCTCACATTCAGGACAGGATCGCGACACATTTGCCGACTGCCGCTCCGATAGCAGCCAGCGACGCGGCGGCACCTAGCGGATTAATCAGGTTTAATCCGTACGAGAAACTAACGACGCTCTCCGGCAAGCTGGCCAGTATTCCGCAAAATGCGAATCCGGACGCGGAGAGCACGGACAACGACTTGATTTCAAATCTACTGGGGATAGGAGACAAGAGTTTCATCGACAAAGTGCTGCAGGCATCGCCCGACGATGCTGCCAAATTGTTAGGAGTAAACCACAGCCACGAGTGA
Protein Sequence: MIPDRAIFQNDIVLGSVASEHSSLQDRKVLINKDDCVTVKSGSGQRSESEAQADAASSPSSVELPESAHSCPACSAVLPTSGDLTNHIHGHNSSRSTDCSGEDEYCCNMCNRVFSSSSSLNRHLSMHAGARPYKCKYCEMAFTTNGNMNRHLKTAHRGASPHSYTDSEASTSGSNSSDSEKSKRRHLEEYNNNEITKRNSPDYVEGHEEREEDEEEMPSSLPAKRKCSSDNETQKRHKILLNNSRTEMKPRPDDGQNICTCPVCGRQDFGSSALLEAHLERNHPEFPAKCDSCNLSFKNHRVLNLHRFMIHFAEHPVGNTARNLRNSVVGFNDLTFVDFSSGKFPAIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRSALDAHETDCGTANSQSRTNDGQSRRDDFFAGLDLQNKAALTEAKEGKDLADIQSIISVTSGPILQNFPRSDASTPENVKFNPGASSSGSSGTYSSEYHEEEAQDAFAAEFRRMKLKGEFPCRLCSAIFPNLRALKGHNRAHMGVGPGMPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNENVGRTSPRVVKDEVRKSLVFPSERGELHHQAQVHYPPPVRGEIRIIEEAKLHNAAMGAAAHHGANHCDKSETFSRLGQQHVEMIQARGDDGKPGQDAKSNNSKLDDDLESRSSEGSVSLVTETKSEPHQRVQSSPMNLKKVLNLSETSGEDGPLDLSMDVLDLSKKSRNKDENDFAASHEQYGKSQKDLYNAASHLFLTEAFLKAGHGSSQPTSLEALYANAIYRNFGTYPAGVGAGILPSYMFSPHIFGQDFALKDRLEKDLVRGLQLTSGGTLVEPSTSSAGFSAYSQNRDMNPQSADQSEYAKLISSKMASKGVTSRDKPDNMSSSSNSVKMVIKNGVLMPKQKQRRYRTERPFSCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPTNHSTLLQNLGQPQAAPQVPQSYTNILPKSEESTEFPRHSISDQVKYAILTQKLRANKIEDNDSEEELVIDEGPQEKECQGESQDQKEKSLLRGQLEGGESAKETAAKESSRTDSNETEPEKKADAREEARGGQTSAETDHDRSADRDPPSRACKTGPVEVKSEKTEDENTDLASVSELLDNACQQYPEFQSQYLSDEEGLVASNSECHNSGSDEKSDSVNSANSVTAPSKKKKKKKKSAYSMAPNKVICPYCQRPFPWTSSLRRHILTHTGQKPYQCTHCSLLFTTKSNCDRHLLRKHKTNPNKVHRARNSSSPDSQPVINSNNSFSTRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKLKSRSDTPSSEPQNSPPECPKQNNEQTDYDSQSSSVSEGPLEPSSVATLPKSNSNTSSTNDTVRSRRSSPRTSPGPSDVPFKCHLCDCGFADRQDCLEHIKVNHKRSYEMLVAKGALDMDIDAMEEQQQPPPQHQTSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEENSPSQPSTIAPHSQQQQMLLTANNGNPHIQDRIATHLPTAAPIAASDAAAPSGLIRFNPYEKLTTLSGKLASIPQNANPDAESTDNDLISNLLGIGDKSFIDKVLQASPDDAAKLLGVNHSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00734122;
90% Identity: iTF_01419818;
80% Identity: -