Basic Information

Gene Symbol
nfxl1
Assembly
GCA_964023965.1
Location
OZ030390.1:86588180-86593344[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 3 5.9e+04 -4.4 1.7 15 19 163 167 163 167 0.87
2 19 0.23 4.4e+03 -0.5 0.5 4 10 198 204 197 206 0.93
3 19 6.1e-08 0.0012 20.5 17.2 1 19 212 229 212 229 0.99
4 19 1.9e-09 3.6e-05 25.3 17.6 1 19 265 283 265 283 0.98
5 19 1 2.1e+04 -2.7 1.9 6 10 308 312 307 312 0.90
6 19 1e-07 0.002 19.8 16.9 1 18 318 335 318 336 0.98
7 19 0.77 1.5e+04 -2.2 1.4 5 10 360 365 360 365 0.95
8 19 3.1e-05 0.6 11.8 9.9 1 18 371 388 371 389 0.98
9 19 0.77 1.5e+04 -2.2 0.6 1 5 398 402 398 407 0.88
10 19 5.8e-05 1.1 11.0 15.6 3 18 425 440 423 441 0.91
11 19 1.3e-09 2.5e-05 25.8 11.1 1 19 450 468 450 468 0.97
12 19 0.00058 11 7.8 6.9 10 19 517 526 515 526 0.92
13 19 0.091 1.8e+03 0.7 5.6 1 12 536 546 536 546 0.88
14 19 3 5.9e+04 -6.4 5.0 14 18 575 579 573 580 0.75
15 19 0.0084 1.6e+02 4.1 8.2 1 11 616 626 606 627 0.82
16 19 1.6 3.2e+04 -3.3 0.5 5 10 643 648 643 648 0.82
17 19 0.00012 2.4 9.9 20.8 4 19 658 673 656 673 0.93
18 19 1.6e-05 0.3 12.8 11.7 1 16 716 730 716 736 0.93
19 19 1.4 2.7e+04 -3.0 0.5 6 10 766 770 765 770 0.88

Sequence Information

Coding Sequence
ATGAATACCGGAAAGAAGCAAACTAAGCCACGAAATGTGTGGACAATGCCACACCAAATGCAACCGAAACCGGCAAATGCCAATAACCTCAAAAAATCCGAGGAAAAATTGAAGGAGGCCAATGCAAAATGTAAGGCTGCTGCTGAAAAACACGCCAAGGATTATCAATCATCCGAGGAGGAAGATGAATTAGAAACCAAAGACATTATCGATGGTGTATTAAAGTTTTATACGTCTCCGAAAGAAGAATTTGGCACTTTAGGTAGAACTAAAGGATACCTTGAAGATGCTTTTATTTCTGGAGCTAACACTTGCCTCTTTTGCATGTCAAGCGTTAAACGAAACAATCAGATTTGGAACTGTTACGAATGTTATTGCAGTTTCCATTTGCAATGCATTCAACGATGGGCAAAAGATACAATTACTCAGAGGAAGCAGAAAAGCGAGGATCAAATACAAGTGAGGCAGGTCACAATAGCCTGGTATTGTCCGAATTGTAGGCATGAGTATCAACCGCAAGACGTTCCGTCCGAATACAGGTGCTTTTGTGAGAAAGTTGTCAATCCACAGTTTCAGCCTTTGCTGATTCCCCATTCTTGCGGAGAAAAATGCGGGAAGCAGCTGAAACCGCTCTGTGGGCATACATGTGTCTTATTGTGTCATCCAGGTCCATGTCCTCCCTGCCCTCAAACCGTATCCTCAAAATGCTACTGCGGTGCTCAACCTGCGAAACCACAGAGATGCTGCAACAAGGAGTGGTCCTGCGGATCCCCTTGCAACAAGACGCTCGTTTGCGGGAAGCACAAGTGCTCCCAGCCATGCCATCAAGGCGATTGTCCACCTTGCTCGAAGAAGAGCGTCCAGAAATGTCTCTGCGGCTTATCGCAAAAATTACGAGACTGCGAGACCCCTCTGTGGCAGTGCGAAAAAGTCTGCGCAAAACCGCTCAAATGCGGCCACCATAGCTGCGAGGAGGTGTGTCATCCGGGACAATGCGGCGACTGCGTTCTCTCGCAAGCTCGTACCTGCCCGTGCGGAAAGTCCAGCTTTCAGCTACCATGCACGGAAGAGACCCCGACCTGCGAGGATACTTGCGGAAAATTGCTGGAGTGCGGTCAGCATAGCTGCTATTATAAGTGTCACAAGGATAAATGTGGATCTtgcgCTGAAATTGTGACCAAATCGTGCCGCTGTGGCGCTCATACCAAAGAAGTTCAGTGCAAGAAACCGTATCTATGCGAGACCAAGTGCAAGCAGATGAAGGATTGTTATAAGCATCCTTGCAATAGGAAGTGCTGCGACGGAAACTGTCCGCCATGTGAGAAACCGTGCGGCCAAAAATTGAACTGCAGCAACCACAAATGCATGTCTGTGTGCCACAGAGGCCCGTGCTACCCGTGCCAACTCCAAGAAAAAGTCTTCTGCCGCTGCGGAGCTACATCAATCACCGTACCCTGCGGGAGAAAGCATAAAACGCGCCCACCCAAGTGCTCCATTCTATGCAAGATCCCGCCGGACTGTCACCATGCCAAACGCGATCGCCACAGGTGCCACTTTGGTGACTGTCCGCCCTGCAAGCAGATCTGCAATAAGATCCATGAAGAATGCTCGCACATCTGTCCAGCAACTTGTCACACATCCGTCCTGGTTAAAGTTGTCGGGGAGAAGAAAGCGTCCATGCCGTGGGAACAGACGGGACCGGTGCTCGAGAGGAAGTGCTTTCCGTGTCCGGACTGTGAGGTTCCCGTTCCTGTCACTTGCTTGGGGGGCCATGAGACATCCGATTGGCCCTGTTACCTTGCTAAGACGGCCAGTTGCGGAAGACCATGTGGGAAGATGCTGGTTTGTCAAAATCACACCTGTGCTAAGAGTTGTCATGTCGTGGCGAATGCTGCAAATGATGTTGATGCTGGTGAGGAGTGTGATCGCTGCGATAATCCCTGCTCCAAAGAGAGACCAGAGGGATGTCCTCATCCATGTCCAAAACCCTGCCATCCTGGAAATTGTCCACCCTGCAAGCAAATGGTGCGAGTCAGATGCCATTGCGGTTTGAATCAACCATATGTTTCTTGCAAGGACTGGATTATCCAGGAGAAGAAAGAAGAATTGCAATCCTGTGGCGACCAATGTCCACATAACTATCCGTGTGGTCACCGCTGTCGTACTAACTGTCATTCCGGTCCATGCCCAAATAGTGAGCTCTGcaagaagaaaattaaagtGACTTGTAAATGCAAGAGATTGAAGAAGGAGTTTTCATGCGAGACTGTTAGAAATGGCACAGCTGTGATTAGTTGTGATGAGTTATGTGTGGAGAAGAAAAAGGAACTTGATAAGATGATGGCCATAGAGGAGGAGCAGAAGAAGATGGAGGAAGAGATAAGGAACAAGAAGGAGTTGGAGAAATTTGAGAAAAAGTTCCATGGAAAGAAGAAACATAAGGAACGTAAAGTGCTGGAGGAAGTTGATGATAAAGGTTTCTTGAAGAAATACTGGGTTCCTATTGCTGCTGTTACAATAAGTGTTCTAGCGTCCATTTTTTATACGACCTTGATGTAA
Protein Sequence
MNTGKKQTKPRNVWTMPHQMQPKPANANNLKKSEEKLKEANAKCKAAAEKHAKDYQSSEEEDELETKDIIDGVLKFYTSPKEEFGTLGRTKGYLEDAFISGANTCLFCMSSVKRNNQIWNCYECYCSFHLQCIQRWAKDTITQRKQKSEDQIQVRQVTIAWYCPNCRHEYQPQDVPSEYRCFCEKVVNPQFQPLLIPHSCGEKCGKQLKPLCGHTCVLLCHPGPCPPCPQTVSSKCYCGAQPAKPQRCCNKEWSCGSPCNKTLVCGKHKCSQPCHQGDCPPCSKKSVQKCLCGLSQKLRDCETPLWQCEKVCAKPLKCGHHSCEEVCHPGQCGDCVLSQARTCPCGKSSFQLPCTEETPTCEDTCGKLLECGQHSCYYKCHKDKCGSCAEIVTKSCRCGAHTKEVQCKKPYLCETKCKQMKDCYKHPCNRKCCDGNCPPCEKPCGQKLNCSNHKCMSVCHRGPCYPCQLQEKVFCRCGATSITVPCGRKHKTRPPKCSILCKIPPDCHHAKRDRHRCHFGDCPPCKQICNKIHEECSHICPATCHTSVLVKVVGEKKASMPWEQTGPVLERKCFPCPDCEVPVPVTCLGGHETSDWPCYLAKTASCGRPCGKMLVCQNHTCAKSCHVVANAANDVDAGEECDRCDNPCSKERPEGCPHPCPKPCHPGNCPPCKQMVRVRCHCGLNQPYVSCKDWIIQEKKEELQSCGDQCPHNYPCGHRCRTNCHSGPCPNSELCKKKIKVTCKCKRLKKEFSCETVRNGTAVISCDELCVEKKKELDKMMAIEEEQKKMEEEIRNKKELEKFEKKFHGKKKHKERKVLEEVDDKGFLKKYWVPIAAVTISVLASIFYTTLM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00137579;
90% Identity
iTF_00138919;
80% Identity
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