Agra002296.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- nfxl1
- Assembly
- GCA_963971325.1
- Location
- OZ020221.1:2219314-2225077[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2 3.3e+04 -5.8 1.7 10 12 121 123 121 125 0.54 2 21 2 3.3e+04 -4.4 1.7 15 19 163 167 163 167 0.87 3 21 0.22 3.5e+03 -1.0 0.8 4 10 198 204 197 204 0.94 4 21 4.1e-08 0.00066 20.5 17.2 1 19 212 229 212 229 0.99 5 21 4.5e-09 7.3e-05 23.5 18.5 1 19 265 283 265 283 0.98 6 21 1.4 2.2e+04 -3.6 1.0 6 10 308 312 307 312 0.88 7 21 2.9e-07 0.0048 17.7 16.5 1 18 318 335 318 336 0.98 8 21 0.51 8.3e+03 -2.2 1.4 5 10 360 365 360 365 0.95 9 21 1.1e-05 0.18 12.7 11.5 1 18 371 388 371 389 0.98 10 21 0.51 8.4e+03 -2.2 0.6 1 5 398 402 398 407 0.88 11 21 5.3e-05 0.87 10.5 16.2 3 18 425 440 423 441 0.92 12 21 9.4e-11 1.5e-06 28.9 12.9 1 19 450 468 450 468 0.98 13 21 2 3.2e+04 -4.1 2.7 5 10 495 500 491 500 0.82 14 21 0.00017 2.7 8.9 4.3 9 19 515 525 513 525 0.91 15 21 0.13 2.2e+03 -0.4 5.1 1 12 535 545 535 545 0.88 16 21 2 3.3e+04 -5.0 4.6 15 19 572 576 571 579 0.61 17 21 1.1e-06 0.018 15.9 5.9 1 11 615 625 615 626 0.96 18 21 2 3.3e+04 -5.5 3.5 15 18 640 643 639 647 0.62 19 21 8.1e-05 1.3 9.9 20.8 4 19 657 672 655 672 0.93 20 21 2.7e-06 0.043 14.7 11.2 1 16 715 729 715 735 0.93 21 21 0.72 1.2e+04 -2.7 0.6 6 10 765 769 764 769 0.89
Sequence Information
- Coding Sequence
- ATGAACAGCGGAAAGAAGGCCAACAAGCCACGGAATGCGTGGACAATGCCACAACAACAGCAGTCAAAACCGGCAAGTAccaataacctcaaaaatccCGAGCAGAAATTCAAAGAGGTAAACGCAAAATTGAAAGCTGCCGTTGAGAAACATGCGAAGGATTACGTGTCTTCCGAGGAAGAAGACGAATTGGAAACTAAAGACATCATtgACGGTGTTTTCAAATTTTATACCTCCCCGAAAGAGGAATTGAGCCATCTTGGGCGAACCAAAGGTTACCTAGAAGATGCCTTCCTCTCAGGAGCTAATACATGCCTATTTTGCATGTCAAGCGTCAAAAGGACCAACCAGATATGGAACTGTCACGAGTGTTACTGCAGTTTCCATTTGGAATGCATTCAACGTTGGGCAAAAGATACAATCACCCAAAGGAAGCAAAAATGCGAGGATCAGATACAAGTGAGGCAGCTTAAAATCGCCTGGTACTGCCCTAATTGCCGGCACGAGTACCAACCGCAAGACATTCCGTCCGAATACAGGTGTTTCTGCGGGAAAGTGAAGAATCCCACATTCCAGTCTTTGCTGATTCCGCATTCCTGTGGAGAAAAATGCGGGAAGTTATTGAAGCCATTGTGCGGGCATACGTGTGTTTTGCTGTGTCATCCAGgtCCGTGTCCCCCCTGTCCCCAAACTGTGACCTCAAAATGTTATTGTGGTTCTCAACCTGCAAAAATGCAGCGATGCTGCAACAAGGAGTGGTCTTGCGGGTCTCCCTGCAAGAAGACACTCGTCTGCGGCAAGCATAAGTGCCCCAAGCCTTGCCACCAGGGCGACTGCCCCCCGTGCTCCAAGAAGAGCATCCAAAAATGTCTCTGCGGGTCTTCACAAAAGCTAAGGGACTGCGAGACACCACTCTGGCAATGTGATAAgGTCTGTTCGAAACCACTAAGATGTGGTCACCATAGCTGCCCGGAGGTTTGCCATCCCGGAGCATGTGGTGATTGCGTGCTATCGAAAGGTAGGACTTGCCCCTGCGGAAAGTCTCACTTCCAACTTCCGTGCACGGAGGAAACTCCGACTTGTGAGGACACCTGCGCAAAATTGCTCGAGTGTGGACAGCATAGTTGCTACAACAAGTGTCACAAGGATAAATGTGGATCTTGTGCTGAAATTGTGACAAAGTCTTGCCGCTGCGGAGCACATACCAAAGAAGTTCAGTGCAAGAAGCCGTATTTATGCGACACCAAGTGCAAGCAGATGAAAGATTGTTTGAAACATCCGTGCAAAAGGAAGTGTTGCGACGGAAACTGTCCGCCTTGCGAGAAACCGTGCGGGCAGAAACTGAACTGCGGCAATCACAAGTGCGCCTCCGTGTGCCACCGCGGGCCCTGCTACCCCTGCCAGCTCCAGAATGTCTTCTGCCGCTGCGGAGCCACATCCATCACCGTCCCCTGCGGCAGAAAGCACAAGACGTGCCCGCCCAAGTGCTCCGAAATTTGCAAGATCCCGCCGGACTGCCACCATCCGGAACGCGAACGACACAAGTGCCATTTCGGAGATTGCCCATCGTGCCGACAGATTTGCAACAAGCTCCATGAGAAATGCTCTCATATATGTCTGGCAACTTGCCACACGTCTGTCCTCGTCAAAGTTGTCGAGGAAAAGAAAGGGTCCATGCCTTGGGAACAGACGGGCCCCGTGCTGGAGAGAAAGTGCTTGCCGTGTCCCGATTGTGAGGTCCCGGTCTCAGTCACCTGTTTGGGATTGCACGAGACCTCCGATTGGCCGTGTTTTCTCGCTAAGCCCTCCAGTTGTGGAAGACCTTGCGGGAGGATTTTGCCCTGCGGAAACCACACGTGCGCCAAAGTTTGCCACGTCGTGCTAAATCCACCAAACGAGACTGACGCTGGTGAGGATTGTGACAGCTGTCATAATCCGTGTACCAAGGACAGACCTAACGGATGTCCTCATCCATGTCCAAAGCCTTGCCACCCGGGAAATTGCCCGCCATGCAAGCAAATGGTCCGGATTAGATGCCATTGCGGGTTGAATCAACCATATGTTGCTTGTAAAGACTGGATAGTGGAGGAAAAGAAAGAAGAATTGCAATCTTGTGGTGACCAATGTCCTCTTAATTATCCGTGTGGTCATCGTTGTCGTGCCAACTGTCATTCCGGTCCCTGTCCAAACAGCGAACTCTGCAAGAAGAAAGTCAAGGTGACTTGTAAATGCAGAAGACTGAAGAAGGAATTTTCCTGCGAGACGGTGAGGAATGGTGGTGCCGTGGTTAGTTGCGATGAGGTGTGCGTTGAGAAAAAGAAGGAGGTTGAAAAGATGATGGCTGTTGAGGAGGAGCAGAAGAAAATAGAGGAGGAATTGAAGAACCAGAAGGAGTTGGAAAAGTTTGAGAAGAAGTTCCACGGAAAGAAGAAGCAGAAGGAGCGGAAGGTGCTCGAGGAGGTCGACGATGGTGGTTTCTTCACGAGGCACTGGGTTCCCATCGTTGCTGTTACCATAAGCGTTCTAGCGTCCATTTTTTATACGACTTTTATGTAA
- Protein Sequence
- MNSGKKANKPRNAWTMPQQQQSKPASTNNLKNPEQKFKEVNAKLKAAVEKHAKDYVSSEEEDELETKDIIDGVFKFYTSPKEELSHLGRTKGYLEDAFLSGANTCLFCMSSVKRTNQIWNCHECYCSFHLECIQRWAKDTITQRKQKCEDQIQVRQLKIAWYCPNCRHEYQPQDIPSEYRCFCGKVKNPTFQSLLIPHSCGEKCGKLLKPLCGHTCVLLCHPGPCPPCPQTVTSKCYCGSQPAKMQRCCNKEWSCGSPCKKTLVCGKHKCPKPCHQGDCPPCSKKSIQKCLCGSSQKLRDCETPLWQCDKVCSKPLRCGHHSCPEVCHPGACGDCVLSKGRTCPCGKSHFQLPCTEETPTCEDTCAKLLECGQHSCYNKCHKDKCGSCAEIVTKSCRCGAHTKEVQCKKPYLCDTKCKQMKDCLKHPCKRKCCDGNCPPCEKPCGQKLNCGNHKCASVCHRGPCYPCQLQNVFCRCGATSITVPCGRKHKTCPPKCSEICKIPPDCHHPERERHKCHFGDCPSCRQICNKLHEKCSHICLATCHTSVLVKVVEEKKGSMPWEQTGPVLERKCLPCPDCEVPVSVTCLGLHETSDWPCFLAKPSSCGRPCGRILPCGNHTCAKVCHVVLNPPNETDAGEDCDSCHNPCTKDRPNGCPHPCPKPCHPGNCPPCKQMVRIRCHCGLNQPYVACKDWIVEEKKEELQSCGDQCPLNYPCGHRCRANCHSGPCPNSELCKKKVKVTCKCRRLKKEFSCETVRNGGAVVSCDEVCVEKKKEVEKMMAVEEEQKKIEEELKNQKELEKFEKKFHGKKKQKERKVLEEVDDGGFFTRHWVPIVAVTISVLASIFYTTFM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00981973; iTF_00138919;
- 90% Identity
- -
- 80% Identity
- -