Mpro026031.1
Basic Information
- Insect
- Melinopterus prodromus
- Gene Symbol
- -
- Assembly
- GCA_964023965.1
- Location
- OZ030392.1:66342840-66347908[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.26 3e+03 0.1 0.0 21 43 146 168 137 172 0.81 2 9 0.0037 43 6.0 0.2 23 47 228 252 213 259 0.77 3 9 0.4 4.7e+03 -0.5 0.1 23 47 256 280 252 287 0.81 4 9 0.022 2.6e+02 3.5 0.1 21 43 282 304 268 307 0.91 5 9 2.1e-06 0.025 16.4 0.1 22 51 317 346 314 348 0.91 6 9 0.52 6.1e+03 -0.9 0.0 22 44 373 395 368 399 0.84 7 9 0.058 6.9e+02 2.1 0.4 21 47 400 426 397 431 0.87 8 9 0.64 7.5e+03 -1.2 0.1 23 44 430 451 423 455 0.80 9 9 0.0089 1e+02 4.7 0.0 21 43 456 478 448 488 0.87
Sequence Information
- Coding Sequence
- ATGTTGGAAAACAATGCGATAGAAGCTCACAGTCTCGTAAAAACTGAATTATCATCTACGAGTTCTTGTAGAATTTGTCTGCTTGAAACCGATTGCCAGAATATCTTCGAATTGAATTACGAGGGTCAAGATATCGTGGATATCTACAGTTTTTGCACTAATATTAAAttgGTGAAGGAACTGCACAATCCCGAACATGTTTGCTTGTCGTGCATTACCGAGCTAATTCAAGCGTACGAGTTCATAACAAAATGTCAAACGTCCCATGAATTTCTACTATCAATACCCGAAGTTACAACAGAAAATGTGACGGAACATAATAGTGACGTTACAAAACCTGAGGAAGATATTTATATCCAAGTAATTGATAAAACTCCTAAGGAAACAGACGAAAATAAAAGCTTAGAGAAAGAAGAAACCCACCTTGAAATAAAAGAAGAGAATAGTCATACGTGTCTTATATGTTTAAAAGAGTACACAACATCGGCTGGCTTGAAAAATCACGCGAAGACGCATGAGAAAGAGATTACAAATAATCCCGAAGATATTGAGAAGAGAAAAATTTTAGATAGCGAGGTAAAACAGCTGAAGAGTGGTCGTAAATGCCCTAAATGTTCGAAGGTGTTTTCGACTATAGCTGGGCTGAAGATTCATTATAGGTCGCATGCGAATGGGACAAAGGATGCGATAACATGCAAAATATGCGCGAAAACTTTAATCTCTCGGAAGAATATTGCGAGACACATGTTGATACATACAGAACATAAACCGTTTCGTTGTGAGGAATGCGGCAGAGGTTTTAGACAGAAACACTCCCTACAAACGCACATGATGATCCACACAGGCGAACGACCAGTTGTCTGCGAATTCTGCGCTCAAACCTTCAAGCAAGTGAAAGACCTGAAGTACCACCACAGCAAAGGCGACTGCACGCTCATCGAGAACAAAAACGACCCGACAACTTGCAATATCTGCTTAGCACCAGCAAAATCGTACCGAGCTCTTCGACAACACTACTCGTTAGCCCACAGCAAAAAAGAATATCTCTGCAACGAGTGCGGAAAGGGCTTTATATCCGCCGCAGGATTAAAACAACACCTCCAAACTCACACTGGCGATAGACCTTACGTATGCGAAGTTTGCGATAAGAGATTTCTGCAGAAGCATTCGTTAAAGTATCATATGTATATCCATACGGGGGAGCGGCCTCATCGTTGTGATATTTGCGGGAAATCGTTTGTTCAACATCATCATTTGACGATACACATGCGTTTGCACAGCGGGTACAGGCCGTACAGTTGTCAGATTTGTTCAAAGTCGTTTACGATGAAGGGGAATTTGACTGTGCATATTAGAACTCATACTGGCGAAACCCCGTTTGTGTGCGATGTATGCGACGCAGGATTTCATGATTCGAGTTCGTTGAAAAAGCATAAGGTTAAGCATGATTTGGTGAGAGGTGTGGCGAAGGTTAAAAAGCCGGATAAAGTTATTGATTTGACTGTAGGATGA
- Protein Sequence
- MLENNAIEAHSLVKTELSSTSSCRICLLETDCQNIFELNYEGQDIVDIYSFCTNIKLVKELHNPEHVCLSCITELIQAYEFITKCQTSHEFLLSIPEVTTENVTEHNSDVTKPEEDIYIQVIDKTPKETDENKSLEKEETHLEIKEENSHTCLICLKEYTTSAGLKNHAKTHEKEITNNPEDIEKRKILDSEVKQLKSGRKCPKCSKVFSTIAGLKIHYRSHANGTKDAITCKICAKTLISRKNIARHMLIHTEHKPFRCEECGRGFRQKHSLQTHMMIHTGERPVVCEFCAQTFKQVKDLKYHHSKGDCTLIENKNDPTTCNICLAPAKSYRALRQHYSLAHSKKEYLCNECGKGFISAAGLKQHLQTHTGDRPYVCEVCDKRFLQKHSLKYHMYIHTGERPHRCDICGKSFVQHHHLTIHMRLHSGYRPYSCQICSKSFTMKGNLTVHIRTHTGETPFVCDVCDAGFHDSSSLKKHKVKHDLVRGVAKVKKPDKVIDLTVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00138363;
- 90% Identity
- iTF_00138363;
- 80% Identity
- iTF_00981462;