Msca003652.1
Basic Information
- Insect
- Melanostoma scalare
- Gene Symbol
- Hr39
- Assembly
- GCA_949752695.1
- Location
- OX456984.1:54675639-54681458[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.7 1.6e+04 -3.2 6.2 76 123 220 278 141 348 0.50 2 3 4.4e-17 1e-12 50.2 5.3 1 155 447 595 447 603 0.69 3 3 3.8e-78 8.8e-74 251.3 0.2 200 408 599 800 587 800 0.95
Sequence Information
- Coding Sequence
- ATGTCATCAACAATCAAAAGCGACTCAACTGCATACAATGCGGGCCATGGCAGCACCATCACTAACATAATTGGCGTACAACAATCACAACCGACTTCATCATCCATAATACGTAATAATGTCTCGGTGACAAATATCAAATGTGAAGAAGATCGCAATAGCGTTAGTACACTACGAGCAACAGCTCCAGGTGCAGTAGTAGCGACATCATACTACAACAAAGGCAATGGAGCTATTCGGATTCCGGTTAGCAAACGAGAAGAGTCTGACTCGGAGAGTGAACTGTCGCATATTGAAAATCTCAAAGTAAATCGACGATCAGTTAGTCAAGCTGTGAAAAACGGTCCAAGACCAATGTCATGGGAAGGTGAACTCTCTGATTGTGAACCAGACCCGATGGACACAGAAAACTCGACCAGCTGCGACAAGACCTTTACCAATGAGCCTGTAACTGTGATCAAAAATGAGCCACACACAAAGCCAAAGCTCGATCCGATTTGTTTAGAGATTAACTCATCACAATACATCAACAAAAAACCACAAAGTGACCCCATTAATCTTAAGTTTGAGCCAGGCCTGCTGGCAGATCCCACCGGCACTAGTAACTCGCCATTGCTTGCACGTTCGAAGACTACATCCAATTTGTTGCCTGCCAATCCTAGCCCCGATTCTGCCATTCATTCCGCGTACACGCACAGTTCACCGAGTCAGTCGCCTTTGACTTCCCGACACGCCCCTTACACACCGTCGCTGAGTCGCAATAACAGCGATGCGTCACATAGCAGCTGTTATTCATATAGCTCGGAATTTAGTCCGACACACTCGCCTATCGCTGGTCGTCACAATATGTATGGCAGCTACAATGGCGGATCACTCCATCATTCCGTTTTGTATCGTCCGACAATTTCGGATAGTGGCAGCAGTGCTGCTAGTTGTTCCTCTTCGGACCCACAGAATCTATCACAAGCCGCTGTTGTGGCAGCGGCGGCGTCTGCGCTGGCCGCAGCCGCATCGTCGTCTATTTCGGTAAACGGAACTACTCCACCAGGTCTCAAAACTGAGGAGCTTCTCTTTGACAGTGAAGCACTACCGTCAGCGGGTATCTCGCGACAGCAGCTGATCAACTCACCGTGTCCCATTTGTGCAGACAAGATCTCTGGCTTCCATTATGGTATTTTCTCATGTGAATCGTGTAAAGGCTTCTTCAAGAGAACAGTACAAAACCGCAAGAACTATGTTTGCGTGCGAGGAGGACCTTGTCCGGTAACTATTTCCACAAGAAAGAAGTGTCCCGCCTGtcgttttgaaaaatgtttacaaaaagGAATGAAACTCGAGGCGATACGCGAGGATAGAACACGTGGAGGTCGCTCAACATACCAGTGTTCATACACGTTGCCAAACTCGATGCTGAGTCCGTTGCTAAACAACGACCAGTCCAGTCCGCAGCaaactcaacaacaacaacaacagcagcaacaacaacagcacaaCAGTTGCTCTCGAATGGGAGTTAATGGCTTTGTCATCAAAACAGAACAACCAGATAGCAGTACAGGTGGAACATCTACTCCGACACCAGGTAGCAGTAGCTATCAACGTTCCACGAGTCAAGATATTCCCACCCTACTCCAAGAAATAATGAACGTTGAACATTTGTGGCAATACAATGCAACAGAGTTGGCACGACTGAATCAGCCGTTGTCGGCGTCGTGTTCGTCTTCGAGCTCATCGACATCGGCCCCATCTGGTAATATTGCGTCAAATCCGCTGCTGGCCAGCGCTGGTCTCTCATCAAATGGAGAGAATGCAAATCCAGACCTAATAGCCAACTTATGTACGGTCGCTGACCATAGATTGTACAAGATCGTGAAATGGTGCAAAAGTTTGCCGCTTTTTAAGAACATTTCTATTGATGATCAAATTTGTCTGCTGATCAATTCATGGTGTGAACTTTTATTGTTTTCGTGTTGCTTCCGATCGATTGATTCACCGGGTGAGATCAAGATTTCACAAGGCAAGTCAATAAACCTGGCTCGAGCGAAGGCGAATGGTTTGCAGTCGTGCATTGAGCGGATGCTGAATCTGACAGACCATTTACGACGGTTGCGGGTCGATCGGTATGAATATGTTGCCATGAAAGTTATCGTCTTACTTCAATCAGaCACATCTGAGTTAACAGAACCGGTGAAAGTTCGTGAGTGTCAAGAAAAAGCTCTGCAATCATTGCAAGCATACACTTTAGCCTTTTATCCTGAAATGCCATCAAAATTCGGTGAATTGCTTCTTAGGATTCCAGAACTACAGAGAACGTGCCAGCTTGGCAAGGAGATGCTAACAATTAAATCTCGTGATGgcggtgattttaatttattgatggAACTTCTTCGCGGAGAACATTGA
- Protein Sequence
- MSSTIKSDSTAYNAGHGSTITNIIGVQQSQPTSSSIIRNNVSVTNIKCEEDRNSVSTLRATAPGAVVATSYYNKGNGAIRIPVSKREESDSESELSHIENLKVNRRSVSQAVKNGPRPMSWEGELSDCEPDPMDTENSTSCDKTFTNEPVTVIKNEPHTKPKLDPICLEINSSQYINKKPQSDPINLKFEPGLLADPTGTSNSPLLARSKTTSNLLPANPSPDSAIHSAYTHSSPSQSPLTSRHAPYTPSLSRNNSDASHSSCYSYSSEFSPTHSPIAGRHNMYGSYNGGSLHHSVLYRPTISDSGSSAASCSSSDPQNLSQAAVVAAAASALAAAASSSISVNGTTPPGLKTEELLFDSEALPSAGISRQQLINSPCPICADKISGFHYGIFSCESCKGFFKRTVQNRKNYVCVRGGPCPVTISTRKKCPACRFEKCLQKGMKLEAIREDRTRGGRSTYQCSYTLPNSMLSPLLNNDQSSPQQTQQQQQQQQQQQHNSCSRMGVNGFVIKTEQPDSSTGGTSTPTPGSSSYQRSTSQDIPTLLQEIMNVEHLWQYNATELARLNQPLSASCSSSSSSTSAPSGNIASNPLLASAGLSSNGENANPDLIANLCTVADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSIDSPGEIKISQGKSINLARAKANGLQSCIERMLNLTDHLRRLRVDRYEYVAMKVIVLLQSDTSELTEPVKVRECQEKALQSLQAYTLAFYPEMPSKFGELLLRIPELQRTCQLGKEMLTIKSRDGGDFNLLMELLRGEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00311850;
- 90% Identity
- iTF_01223496;
- 80% Identity
- iTF_00976582;