Mper016279.1
Basic Information
- Insect
- Melanchra persicariae
- Gene Symbol
- zfy1
- Assembly
- GCA_947386135.1
- Location
- OX376669.1:13269515-13289119[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.37 28 5.9 1.0 1 23 423 445 423 445 0.97 2 12 0.4 30 5.8 3.8 1 23 452 474 452 474 0.97 3 12 1.1 83 4.4 1.1 1 15 478 492 478 501 0.82 4 12 2.2e-05 0.0017 19.2 1.8 1 23 506 528 506 529 0.94 5 12 0.0086 0.65 11.0 0.8 2 23 536 557 535 557 0.97 6 12 1.7e-05 0.0013 19.5 0.7 2 23 571 592 570 592 0.97 7 12 0.73 56 4.9 3.1 3 23 598 619 596 619 0.95 8 12 0.00043 0.032 15.1 4.2 2 23 630 652 629 652 0.96 9 12 0.13 9.7 7.3 0.3 1 23 659 682 659 682 0.93 10 12 0.0066 0.5 11.4 0.7 5 23 694 713 693 713 0.93 11 12 0.00022 0.016 16.0 4.7 1 23 722 744 722 744 0.98 12 12 0.002 0.15 13.0 0.5 1 23 749 772 749 772 0.95
Sequence Information
- Coding Sequence
- ATGGAGTCGGCGTTGCCAATGGTGGAGATAACTGTGAAGCCTGAACCAATAGAATTTGAGAATTCAGAGGAGAATGTACAGATTGACTTCAATCAAGAACCTGAAGAAGTGAGAGAAGAAGAATTATGGATCAAGACAGAGCCCCTAGAAGATGATTCTCAAGACTCCATCAAAGGAGAGGACCAGGGAACACTCTTCTCTGAGAACGAAGCTAAGTTAGATGGAGAATCCCTACAGGATGATGAATTGAACAGAAGCAGGCAATCTAATGCCCCCTCAAGAAAACAGATAATGGTGTTTCTAGATTTCCTCAATGAGCACAGGGAGCTTGCCAACTGCATGCTGAGGGGACCGGCTGGCCGGGTTAGGGCACATCAGCTGTGGGAAGATATTGCGGAGAGACTTAACAACATCACTGGTTGCCATAAAACTATACAACAATGGCAGAGGgtttgGTCCGACAAGAAGTATTTAACAAGAAAAGCGGCGGCTGCCAGATATGCGTTCTTGTCAGGTGGTCCCCAAGCGCCAGAGCTGACTCTTCAAGATGAGAAGATCTTGTCTATTATAGGAGAACCGTACCCACTGAGACGTATTGCTCATAAACCGGCAACACCTGAGCCAACACAAGAAGTTCTAATAGTATCTGTCCCACCAAAGCGAGGACCAGCGAAGCCAGAACAGGAGCAACCACCCATCCCCGTAGAAGGATTTATGTATACAGAACTAGAAGTACCATTATTACCATGTAGACCACCACGAAAAACTTATACTCCTAGAAAGACTGAATCTTCAAGGAAAGAGTTGGCAAGGAAATCTGATATCCCAAAGCCAGATGTGCCATCAACACCAGTTGTTGTTCCCGATGTGATACGTCAGCCAGATGTATTGAAACCACCTGATGAACTTACTAACGCTATTGTTCAGGGAGATGAGGACCCGCCGCCATCGCCTTCTGTTACGGATCCTCTTACGCCAGCGCCAACGCCACCAGACGAAAAAAAAATTAAAGATCTGAAATCAAGATTGCCGCTTAAGAAGAGATTAGAGAAGCGAGTCAAGCAAGAAGATGAAGACTTCCCAAAGCAAGAAGAAAAGAATGACGCCGAAGAAAATGAACAGCAAGAGGATAATGCTCAACCTAAGATGGAAACCCACCTAATGTACTCCTATGAAACATTGAGGAACATAGAAATCGTGACCATCGACGAGGAAGAACGGCAGAAAGAGTACGAGAAGACGCTGAAGGCCCGTGAACACATGCGCCATGTGTGTGTGCACTGCGCGCTTGGCTTCGTCCTCAAGCAAGCATTCGATATGCACATGAAGGTTCATGCTCCTGAATCAGGCGACCACGAATGCGTACTCTGCCACTCCCGTCTCAAAACCGCTGACATGCTGTACAAACACCGCTTACGGCACTACCGCCGCTACCGGTGCCTGCTCTGCCGGATGCGGTTCAAGGACAAGGATACGGCCGCCTGTCACGTCATGAACGAACATACGGGACAGACCTTCGAGTGCGATCGTTGTGGGAGAGGATTCAAAAGACCGCAGTATCTGAAGAAGCACGTAGCCCAGCATCACACGAAGCCTCACGATCTTGTTTGCGGCGTCTGCTTCCGAGTCTTCCACGAGCGGGGCTGGTATAGGTCCCACGTCAGGACCCATAACGAGGAGGTTAGAGCCAAGACAGTGCGCCTGCCAGTCACCTGCGAGATATGTTCCCGCGACTACAAGAACAAGGCGAGTCTGAAGCGTCATCTCCTCACCCACGATGAGGACGTCCATTGTGAGATCTGTTTCGAGAAGTGCAAGAATCGGATCACGTTGGGAAATCACTACTTAAAGGTGCATAATGAGAAATATGTTGGTGCGCCTGAGCAAACGTGCACTCATTGCGACCGGATCTGCGCGACGCGAGCGATGCTCAAGCGACACATACAGAGAATGCACAGCGATAGAACTAAGAAATACCAATGCGACTACTGCCAGCGCCTCTACCTGACTAAGGGCGAAGTCCGAGCACACATCACGTGGTCCCACATGCCGGCCGAGGCCCGAGGGGGCCACGCCTGCACCTGCGGCCGCATCTTCCGGAGCCCCTCGTTACTGCGCGACCACAAGGCCAGGTTCCATGCCGCGCAGCCTCCGCCCAGGGTGCACCAATGTGACCACTGCGAGAAAGCGTTTGCGAACAAGCAAGTCCTCAACCGTCACAAGAAGAGCCACTCCAACGAGATGTACCCCTGCAAGGAGTGCGGACTACTATTCAAGACTCAGCCCTACGTCAAGGTACACTATCAACTCAAACACCTCAACATGACCCGAGCACAAATCAAGGCACAAAGAAAACTCAACAAAGAAAAGATCATACTCAACAATATCAATAGAAGTACGAATTGGGAACCACACATTGCCGACAAGAAGAATAGCGCAGTTGCTATTGAAAATGAAGAAGACCCACTCCTAGTTCAGGAGGGCGAAATACCAATCAAAACTGAGCAAGAAAGTGAATTAAAAATCCCAACTTTCCAGACTTTTGTTGATATTAGTAGAGATGAATAG
- Protein Sequence
- MESALPMVEITVKPEPIEFENSEENVQIDFNQEPEEVREEELWIKTEPLEDDSQDSIKGEDQGTLFSENEAKLDGESLQDDELNRSRQSNAPSRKQIMVFLDFLNEHRELANCMLRGPAGRVRAHQLWEDIAERLNNITGCHKTIQQWQRVWSDKKYLTRKAAAARYAFLSGGPQAPELTLQDEKILSIIGEPYPLRRIAHKPATPEPTQEVLIVSVPPKRGPAKPEQEQPPIPVEGFMYTELEVPLLPCRPPRKTYTPRKTESSRKELARKSDIPKPDVPSTPVVVPDVIRQPDVLKPPDELTNAIVQGDEDPPPSPSVTDPLTPAPTPPDEKKIKDLKSRLPLKKRLEKRVKQEDEDFPKQEEKNDAEENEQQEDNAQPKMETHLMYSYETLRNIEIVTIDEEERQKEYEKTLKAREHMRHVCVHCALGFVLKQAFDMHMKVHAPESGDHECVLCHSRLKTADMLYKHRLRHYRRYRCLLCRMRFKDKDTAACHVMNEHTGQTFECDRCGRGFKRPQYLKKHVAQHHTKPHDLVCGVCFRVFHERGWYRSHVRTHNEEVRAKTVRLPVTCEICSRDYKNKASLKRHLLTHDEDVHCEICFEKCKNRITLGNHYLKVHNEKYVGAPEQTCTHCDRICATRAMLKRHIQRMHSDRTKKYQCDYCQRLYLTKGEVRAHITWSHMPAEARGGHACTCGRIFRSPSLLRDHKARFHAAQPPPRVHQCDHCEKAFANKQVLNRHKKSHSNEMYPCKECGLLFKTQPYVKVHYQLKHLNMTRAQIKAQRKLNKEKIILNNINRSTNWEPHIADKKNSAVAIENEEDPLLVQEGEIPIKTEQESELKIPTFQTFVDISRDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00772375; iTF_00852157; iTF_00953006; iTF_00300623;
- 90% Identity
- -
- 80% Identity
- -