Lwla018549.1
Basic Information
- Insect
- Lacanobia wlatinum
- Gene Symbol
- zfy1
- Assembly
- GCA_947578705.1
- Location
- OX388050.1:16796232-16825219[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.48 42 5.5 0.8 1 23 426 448 426 448 0.97 2 12 0.88 77 4.7 6.8 1 23 455 477 455 477 0.97 3 12 1.2 1e+02 4.3 1.1 1 15 481 495 481 504 0.82 4 12 2.2e-05 0.002 19.2 1.8 1 23 509 531 509 532 0.94 5 12 0.0015 0.13 13.4 0.8 2 23 539 560 538 560 0.97 6 12 2.9e-05 0.0025 18.8 1.1 2 23 574 595 574 595 0.98 7 12 0.75 66 4.9 3.1 3 23 601 622 599 622 0.95 8 12 0.0001 0.0087 17.1 3.1 2 23 633 655 632 655 0.96 9 12 0.043 3.8 8.8 0.8 1 23 662 685 662 685 0.94 10 12 0.0067 0.59 11.4 0.7 5 23 697 716 696 716 0.93 11 12 0.00021 0.019 16.1 4.6 1 23 725 747 725 747 0.98 12 12 0.002 0.17 13.0 0.4 1 23 752 775 752 775 0.95
Sequence Information
- Coding Sequence
- ATGGATTCGACGTTGCCAATGGTGGAGATAACTGTGAAGCCTGAACCAATAGAATTTGAGGAGAATGAACAGATTGACTCCAATCAAGAACCTGAAGAAGTTAAAGAAGAAGAACTATGGATCAAGACAGAGCCCCTAGAAGATGATTCTCAAGACTCTATCAAAGGAGAGGAGCAGGGAACGCTCTCTGAGAATGAAGCCAGGTTAGATGAAGAAGCCCTGAATGATGGATTGAACAGAAACAGGCAATCTAATGCCCCCTCAAGAAAACAGATTATGGTGTTTCTAGATTTCCTCAATGAGCACAGGGAGCTTGCGAACTGCATGTTGAGGGGACCCACCGGCAAGGCTAAAGCACATCGGCTTTGGGAAGATATTGCGGAGAAACTTAATAACATCGGTGGATGTCATAAAACTACACAGCAATGGCAGAGGGTGTGGTCGGACAAGAAGTATTTAACAAGAAAAGCGGCGGCTATCAGATACGCATCCTTGTCCGGTGGTCTGCCAGCGCCAGATCTGACTCCTCAAGATGAGAAGATCTTGGCTATTATAGGAGAACCGATTCCCCCGCGACGAGTTGGGCAGAAACCAGCAACTCCTGAGCCAAAACCACAAACACCAAAACAGCCACAAGAAGTTCTAACAGTATCGGTCCCACCAAAGCGAGGGCCTGCAAAACCAGAACAGGACCCATCCCCACAACTACCCATCCCCGTGGAAGGATTTACCCCAGAACCAGAAGTACCATTACCACCTATTAGACCACTACGCAAACCTTATACTCCTAGAAAGACTGAATCTTTGCGAAAAGAGGTAGCAAGGAAATCTGATATTCCAAAGCCAGATGTGCCATTATCGCCAGTTATTCCACCGCATGTGATAAGCCAGCCAGTATTGAAACCCCCTGATGAATCAACTGAGACTGTTATTCAGATAGATGATGATCCGTCGCCATCGCCTTCTGTTACAGATCCTCCTTCGCCAGCACCACCAGACATAAAATCCGAAGATCTGAAATCAAGATTGCCGCTTAAGAAGAGATTAGAGAAGCCAGTCAAGCAAGAAGATGAAGACTTCCCAAAGCAAGAAAACACAGAGGAGAAGAATGACGCCGAAGAAAATGAACAGCAAGAGGATATTGCTGAACCTAAGATGGAAACCCCCCTGATGTACTCTTATGAAACATTGAAGAACATAGAGATCGTGACCATCGACGAAGAAGAACGCCAGAAGGAGTACGAGAAGACGCTGAAGGCGCGCGAACACATGCGGCATGTGTGTGTGCACTGCGCGGTCGGCTTCGTGCTCAAGCAGGCATTTGATATGCACATGAAGGTTCATTCTCCTGAATCAGGCGACCACGAATGCCTACTCTGCCACTGCCGTCTTAAAACTGCTGACATGCTGTACAAGCACCGCTTACGGCACTACCGCCGTTACCGGTGCCTGCTCTGCCGGATGCGGTTCAAGGACAAGGATACTGCCGCCTGTCATGTCATGAACGACCATACGGGGCAGACCTTTGAGTGCGATCGCTGTGGGAGAGGATTCAAAAGACCGCAGTACCTGAAGAAGCATGTGGCGCAGCATCACACCAAGCCCCACGATCTTGTCTGCGGCATCTGCTTCCGAGTCTTCCACGAACGCGGCTGGTATAGGTCTCACATCAGGACCCATAACGAGGAGGTTCGAACCAAGACAGTCCGGTTGCCGGCCACCTGCGAGATATGTTCGCGCGACTACAAGAACAAGGCGAGTCTGAAGCGTCATCTCCTCACGCACGATGAGGACGTCCATTGTGAGATCTGTTTCGAGAAGTGCAAGAATCGGATCACGTTGGGAAATCACTACCTGAAAGTGCATAATGAGAAATATGTTGGTGCGCCTGAGCAAACGTGTCCCCATTGCGACCGCATCTGTGCGACGCGCGCGATGCTCAAGCGACACATTCAGAGAATGCACAGCGATAGAACTAAAAAATACCAATGCGACTACTGCCAGCGCTTCTACCTGACAAAGGGCGAAGTCCGATCTCACATCACATGGTCCCACATGCCGGCGGAAGCCCGCGGAGGGCACGCGTGCACGTGCGGCCGCATATTCCGGAGCCCGTCGCTGCTTCGCGACCACAAGGCCAGGTTCCATGCCGCGCAGCCTCCGCCAAGAGTTCACCAGTGTGAGCACTGCGAGAAAGCTTTTGCGAACAAGCAAGTCCTCAACCGCCACAAGAAGAGCCACTCCAACGAGATGTACCCCTGCAACGAGTGCGGCCTGCTCTTCAAGACGCAGCCCTACGTCAAGGTACACTACCAACTGAAGCACCTCAACATGACTCGAGCGCAGATCAAGGCGCAGAGGAAACTCAACAGAGAACAGCTCATACAGAACAACATCAACAGGAGTACGAATTGGGAACCACATATTGCCGACAAGAAGACTAGCGCAGTTGCTGTTGAAATTGAAGAAGACCCACTCTTAGTACAGGAGGGCGAAGTACCAATCAAAGAAGAGCAAGAAAATGAGTTTAAAATTCCAACTTTCCAAACTTTTATTGATATCAGTAGGGATGAATAG
- Protein Sequence
- MDSTLPMVEITVKPEPIEFEENEQIDSNQEPEEVKEEELWIKTEPLEDDSQDSIKGEEQGTLSENEARLDEEALNDGLNRNRQSNAPSRKQIMVFLDFLNEHRELANCMLRGPTGKAKAHRLWEDIAEKLNNIGGCHKTTQQWQRVWSDKKYLTRKAAAIRYASLSGGLPAPDLTPQDEKILAIIGEPIPPRRVGQKPATPEPKPQTPKQPQEVLTVSVPPKRGPAKPEQDPSPQLPIPVEGFTPEPEVPLPPIRPLRKPYTPRKTESLRKEVARKSDIPKPDVPLSPVIPPHVISQPVLKPPDESTETVIQIDDDPSPSPSVTDPPSPAPPDIKSEDLKSRLPLKKRLEKPVKQEDEDFPKQENTEEKNDAEENEQQEDIAEPKMETPLMYSYETLKNIEIVTIDEEERQKEYEKTLKAREHMRHVCVHCAVGFVLKQAFDMHMKVHSPESGDHECLLCHCRLKTADMLYKHRLRHYRRYRCLLCRMRFKDKDTAACHVMNDHTGQTFECDRCGRGFKRPQYLKKHVAQHHTKPHDLVCGICFRVFHERGWYRSHIRTHNEEVRTKTVRLPATCEICSRDYKNKASLKRHLLTHDEDVHCEICFEKCKNRITLGNHYLKVHNEKYVGAPEQTCPHCDRICATRAMLKRHIQRMHSDRTKKYQCDYCQRFYLTKGEVRSHITWSHMPAEARGGHACTCGRIFRSPSLLRDHKARFHAAQPPPRVHQCEHCEKAFANKQVLNRHKKSHSNEMYPCNECGLLFKTQPYVKVHYQLKHLNMTRAQIKAQRKLNREQLIQNNINRSTNWEPHIADKKTSAVAVEIEEDPLLVQEGEVPIKEEQENEFKIPTFQTFIDISRDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00974130;
- 90% Identity
- -
- 80% Identity
- -