Basic Information

Gene Symbol
Kdm5
Assembly
GCA_034642435.1
Location
CM067855.1:3543124-3547839[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 4.8e-24 2.5e-20 73.8 0.0 2 89 113 196 112 196 0.95
2 2 1 5.4e+03 -1.0 0.0 31 84 1225 1277 1211 1280 0.74

Sequence Information

Coding Sequence
ATGGCGACTTCAAAGGAAAAAATGACTAGTATGAAATTATCACCTAGTTGTTCAAAAGCTGATTCAGGATATAAGCTTGAAACTGATCAACTCTTTAAAGATGAAGGTTTTGAATTTATTGTGCCCCAAGAAGTTCCAGTTTTTCATCCTACTGAGGAAGAGTTTGCTGATCCTTTAGCATATATTGGAAAAATTCGTCCAATTGCTGAAAACACTGGAATATGCAAAATTAAGCCCCCTCCTAACTGGCAGCCTCCATTTGCTGTAGATGTAGATAAATTAAGGTTCACACCAAGAATCCAACGTCTGAATGAGTTGGAAGCAAAAACCAGGATTAAACTGAATTTTCTGGATCAGATAGCAAAATTTTGGGAATTGCAAGGTTCTTCCCTCAAAATTCCCATGGTGGAGAAGAGAGCACTAGATTTATATACGTTACATAGGGTTGTGCAACTAGAGGGCGGTTTTGAAACTGCTTCAAAAGAACGCAAGTGGTCAAAAATTTCCATTCGTCTTGGTTATCCACCAGGCAAGAGTGTTGGTACCATATTGAAACAACATTATGAGAGATTACTGTACCCATTTGATGTATTTAAACAAGGCAAAGCTCCGATCAAAGTGGATCCAGATGTTCCCGAACGCAACGAAAAAACAGATAAAGACTATAAACCACATGGTATCGTTGGTAGAATGGCGATAAAACCGCCATGTGAAAAAGCAAGAAGGTCTAAAcgatttgaaaatcagaataatgaCGAGGAAAAGCCAAAAATCGAAGACGACGAAGATGCTGATAGTAAAGAATTGAAGAGATTGCAGATTCATGGGGCAGGACCAAAGATGGCTGGATATAATGATAAAAAGAAAAGATCCAAGAACTGCAATACAGAATTCGATCCTCTAGCAAAATATGTCTGTCATAATTGTAGTAGAGGAGATTCGGAGGAATATATGTTATTGTGTGATGGTTGCGATGATAGCTATCATACATTTTGTCTGATGCCACCCTTGTCCGATGTTCCCAAAGGAGACTGGCGTTGTCCCAAATGTGTAGCTGAAGAAGTCTCTAAGCCAACAGAGGCCTTCGGGTTTGAACAAGCTCAAAGAGAATACACATTACAGCAATTCGGGGAAATGGCTGACCAGTTTAAATCTGACTACTTCAATATGCCTGTTCACATGGTTCCGCTTCCAACGGTTGAAAAAGAATTTTGGAGGATTGTTTCATCAATTGATGAAGATGTTACCGTAGAATATGGTGCCGATCTGCATACCATGGACCACGGGTCGGGTTTTCCAACTAAGACTTCCATTAATTTATATCCAGGGGATAAGGAATATGCCGATTCGGGgtggaatttaaataacctgCCGGTACTTGAAGGTTCAGTATTGGGTTATATTAACGCCGACATATCTGGGATGAAAGTGCCTTGGATGTACGTAGGGATGTGTTTTGCAACGTTTTGTTGGCATAATGAAGATCATTGGAGTTATTCTATCAATTATTTACATTGGGGAGAAGCTAAAACGTGGTATGGGGTACCAGGTAGTAAGGCTGAACTGTTCGAGGACACCATGAAGTCCGCCGCACCTGAACTGTTTCACTCTCAACCTGATCTGTTACATCAGTTGGTAACGATAATGAATCCCAATGTGTTAATGAATGCCGGAGTTCCTGTGTACCGCACAGATCAATGCGCCGGAGAATTTGTGGTCACTTTTCCCAGAGCCTACCACGCTGGATTCAATCAAGGCTATAACTTCGCAGAAGCAGTAAATTTTGCGCCCGCAGACTGGCTTAGGATGGGCAGAGAGTGTGTTCTGCATTATTCCCACTTGAGAAGATTCTGCGTATTTTCTCATGACGAACTCGTATGCAAAATGGCTCTTGTTCCAGACAAATTAGACATAACGATAGCGGCGGCTACTTACCAAGATATGTTACACATGGTCGACACGGAAAAAAAGCTCCGCAAGAACTTGCTGGAATGGGGTGTCACCAATGCCGAAAGAGAAGCGTTCGAACTGCTTCCTGACGATGAAAGACAATGCGAGATATGCAAAACTACTTGCTTTCTGTCTGCGTTAACCTGCACCTGTACTAACGTCCTAGTTTGTTTGAGGCATTTTGAGGATTTATGCAAGTGTAGCCCAGCCACGCACACCTTAAGGTATCGCTACACTTTGGACGAATTACCTGTGATGTTAAAGGGGCTCAAATTAAAAGCAGAGTCCTTCGATCATTGGGTGAACAGGGTGAAAGACGCCCTGGATCCCGCTACTCCAAAAACCTTATCGTTGACAGAATTGAAAGCGCTGTTGAATGAAGCCAATGGCAAAAAATTCCCCAAATCCGATCTGCTTCAAACTCTCACAAATGCGGTAGTCGATGCCGAGAAATGCGCCAGCGTGATCCATCAGCTTGATTTGAACAAAATAAGGACCAGAACTAGAAATTCCACGGATACCAAGTATAAACTGACTATCGAGGaactcactttgttctgtgAAGAACTGGATAGTTTAGCTTGCCGTTTAGACGAAAGTAAAAACATCAAGATGCTGTTGCAACAAACCAAAGCCTTCGAGAAAGAAAGCAGAAGATTGCTGCATTTGAAACTATCAGAATGTGTTCTCGTAGAATTGGAAAATTGTTACAGTCTAGGTAACTCTCTTTGTATCGAATTGCCGGCTTTGAAACAAATTGCTGTAAGAACGAAACAAGCTGCATGGTTTAAAGACGTACTTTCATATAAGAAAAGATCTGAGGTACTGGCAATAGAGTCGATAAACAGTCTCATCAAGGGTGGGATGGACTTACCTCCTCATCCAGAAATGGAGGAGGAACTGGGAATTCTTCAAGGTCTTCTTATTGCCAGTCAGGAGTGGGAAACCAAAGCCCAAGCCGTACTAAAAGACAAAGGTAATGATGTTCTAATCGAAGTGGATAAACTCTTGGCAGAAGCGGCTAGTATCAACGCTTATCTTCCAACCGAAGAATATCTGTTCGATGCTATCAATAAGGCCCGAGACTGGCTCCGATTGCAGGAAGATATGAATTCTGCGGAATATTATCCTTATTACGATGACATGGAACAATTGGTCAAAAAAGGACGCTCTTTACCTCTATACCTAGTGGAAGTTAACCGTTTATCCTGCTATCTAGAATCCGCTTACAtatggaaagaaaaaaccagccGAGTATTTCTCAGAAAGAATGCCTCTATAACTCTCATCGAAGCACTGAGCCCCAGAAGCTATGTAATCCCACCGAAACAAAAGAAGAAGGAAAAAGACGATCCGGATCCCATTTTTGAGAACGGTGGAGATCCTTTTTCCATAGTGACTGCCTTCAAACAAGCCGAAGAGAAGGAAATGGAGTTGATGAGAATTTTGAGGAAAGAGAATGCGTCCAAAAGTTTGGATCCAAATGATTGTGCCTCATTCTGCACGTGCCAAAGAGGGGCTTTTGGTCTCATGATGCAGTGTGAACTTTGCAAAGATTGGTTTCATTCGCTTTGTGTTCAACTTCCCAAAATTGCAACTACAAGTTTTAAGGGTAACTTTACAATAGCGGCCATGCATTACGGCTTCAAGGACTGCAAATTTTTGTGTCCGAACTGTTGCAGAACAAAACGTCCAAGATTGGATGTCATTCTTGGCTTACTGATGTCActacaaaaattatattgtcGCTTACCGGAAGGTGAAGCTCTACAATGTCTGACAGAGAGAGCCATGAACTGGCAAGATAGAGCCAGAACTTTATTACAGAATTCAGAACTAGAATCCATTAAATCTATGCTGTCTAACTTCCACAAGAGATTCATGGAAGCTGCAGCGAAACAAAGGACTGAAGAAATAATCTCAAGCGAACTGAAGAAGGCCGGAAGGAATCCAGATTTACAACAGAAGGTCACTGAGATTGCTCACAAGAGTGGAGTTGTGAGTAATGTACAGGAATCCTCTGCCGAATCTGACGATTCTAAGGAATGTACGTCAAGTTCACTTCAAGAAGATCACATAGATGAACACGCATACTCGTTACATCTACCCAAGATCAACGAGGACGAATTCAGGGTCCACATAAGCGCCGATTTGAACCAGCAATTATCCGAGCTGTTGATGGAGGGAGATCTACTCGAAGTGCACCTCGACGAAACTTTGCAATTATGGAAACTGCTTCAAGCCACCAGAAACCCCGAGAAAGAGGCAATACTGATAGATTTCGACCAACAGTCTCTTTCTACTCCAGTCAAAAAGGGTAGAAAGAGAAGATCGGAAGAATGCGAAGCTGCCAGAAAACTGAAAAGCGTGAAGACCAGTATTCAGAGTAAAAAGTCCCCTGAGAAGAAGATCCGGGAGAAGAGAGAAAAGCCAGGAAGGAAGAAGAATAGCGAAAAATCGAAGCagaagaaatctgcagagtctGACGAAGAAGATGAAGATGACATTTATGCTACCTGTGCAGCAGCTAATTGTCAGCTTCCAACTGGGAATGTAGACTGGGTGCAATGTGATGGTGGATGCGAGCTCTGGTTCCATATGGCTTGCGTGGGACTTTCAGTAGGTGACATAAATGAAGATGAGGACTACATTTGTTTGTTGTGTTCTGAGGTGTTTGAGAACCTGAATCCTAACGAAAGCAGTAGGTCTAATAGTCCCCCATCACCAGATTCAACACAACCTTCAACTTCCAAAGAtactaattga
Protein Sequence
MATSKEKMTSMKLSPSCSKADSGYKLETDQLFKDEGFEFIVPQEVPVFHPTEEEFADPLAYIGKIRPIAENTGICKIKPPPNWQPPFAVDVDKLRFTPRIQRLNELEAKTRIKLNFLDQIAKFWELQGSSLKIPMVEKRALDLYTLHRVVQLEGGFETASKERKWSKISIRLGYPPGKSVGTILKQHYERLLYPFDVFKQGKAPIKVDPDVPERNEKTDKDYKPHGIVGRMAIKPPCEKARRSKRFENQNNDEEKPKIEDDEDADSKELKRLQIHGAGPKMAGYNDKKKRSKNCNTEFDPLAKYVCHNCSRGDSEEYMLLCDGCDDSYHTFCLMPPLSDVPKGDWRCPKCVAEEVSKPTEAFGFEQAQREYTLQQFGEMADQFKSDYFNMPVHMVPLPTVEKEFWRIVSSIDEDVTVEYGADLHTMDHGSGFPTKTSINLYPGDKEYADSGWNLNNLPVLEGSVLGYINADISGMKVPWMYVGMCFATFCWHNEDHWSYSINYLHWGEAKTWYGVPGSKAELFEDTMKSAAPELFHSQPDLLHQLVTIMNPNVLMNAGVPVYRTDQCAGEFVVTFPRAYHAGFNQGYNFAEAVNFAPADWLRMGRECVLHYSHLRRFCVFSHDELVCKMALVPDKLDITIAAATYQDMLHMVDTEKKLRKNLLEWGVTNAEREAFELLPDDERQCEICKTTCFLSALTCTCTNVLVCLRHFEDLCKCSPATHTLRYRYTLDELPVMLKGLKLKAESFDHWVNRVKDALDPATPKTLSLTELKALLNEANGKKFPKSDLLQTLTNAVVDAEKCASVIHQLDLNKIRTRTRNSTDTKYKLTIEELTLFCEELDSLACRLDESKNIKMLLQQTKAFEKESRRLLHLKLSECVLVELENCYSLGNSLCIELPALKQIAVRTKQAAWFKDVLSYKKRSEVLAIESINSLIKGGMDLPPHPEMEEELGILQGLLIASQEWETKAQAVLKDKGNDVLIEVDKLLAEAASINAYLPTEEYLFDAINKARDWLRLQEDMNSAEYYPYYDDMEQLVKKGRSLPLYLVEVNRLSCYLESAYIWKEKTSRVFLRKNASITLIEALSPRSYVIPPKQKKKEKDDPDPIFENGGDPFSIVTAFKQAEEKEMELMRILRKENASKSLDPNDCASFCTCQRGAFGLMMQCELCKDWFHSLCVQLPKIATTSFKGNFTIAAMHYGFKDCKFLCPNCCRTKRPRLDVILGLLMSLQKLYCRLPEGEALQCLTERAMNWQDRARTLLQNSELESIKSMLSNFHKRFMEAAAKQRTEEIISSELKKAGRNPDLQQKVTEIAHKSGVVSNVQESSAESDDSKECTSSSLQEDHIDEHAYSLHLPKINEDEFRVHISADLNQQLSELLMEGDLLEVHLDETLQLWKLLQATRNPEKEAILIDFDQQSLSTPVKKGRKRRSEECEAARKLKSVKTSIQSKKSPEKKIREKREKPGRKKNSEKSKQKKSAESDEEDEDDIYATCAAANCQLPTGNVDWVQCDGGCELWFHMACVGLSVGDINEDEDYICLLCSEVFENLNPNESSRSNSPPSPDSTQPSTSKDTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00348609;
90% Identity
iTF_01023625;
80% Identity
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