Basic Information

Insect: Megachile ligniseca
Gene Symbol: -
Assembly: GCA_945859565.1
Location: CAMAOB010000037.1:918406-922472[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00013 0.014 16.2 5.1 2 23 237 259 237 259 0.96

2 11 0.00027 0.028 15.2 3.8 1 23 263 285 263 285 0.99

3 11 0.0008 0.083 13.7 0.5 2 23 292 314 291 314 0.93

4 11 3.9e-05 0.004 17.8 4.6 1 23 321 344 321 344 0.96

5 11 4.6 4.8e+02 1.9 0.2 1 12 349 360 349 368 0.85

6 11 0.0013 0.14 13.0 2.3 1 23 379 402 379 402 0.97

7 11 0.34 35 5.5 0.1 5 20 414 429 413 431 0.91

8 11 3.5e-06 0.00036 21.2 0.2 1 23 438 460 438 460 0.97

9 11 3e-06 0.00031 21.4 2.9 1 23 464 486 464 486 0.98

10 11 1e-05 0.0011 19.7 2.0 1 23 492 514 492 514 0.99

11 11 3.1e-06 0.00032 21.3 1.0 1 23 520 542 520 542 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00013	0.014	16.2	5.1	2	23	237	259	237	259	0.96
2	11	0.00027	0.028	15.2	3.8	1	23	263	285	263	285	0.99
3	11	0.0008	0.083	13.7	0.5	2	23	292	314	291	314	0.93
4	11	3.9e-05	0.004	17.8	4.6	1	23	321	344	321	344	0.96
5	11	4.6	4.8e+02	1.9	0.2	1	12	349	360	349	368	0.85
6	11	0.0013	0.14	13.0	2.3	1	23	379	402	379	402	0.97
7	11	0.34	35	5.5	0.1	5	20	414	429	413	431	0.91
8	11	3.5e-06	0.00036	21.2	0.2	1	23	438	460	438	460	0.97
9	11	3e-06	0.00031	21.4	2.9	1	23	464	486	464	486	0.98
10	11	1e-05	0.0011	19.7	2.0	1	23	492	514	492	514	0.99
11	11	3.1e-06	0.00032	21.3	1.0	1	23	520	542	520	542	0.99

Sequence Information

Coding Sequence: ATGGCAAGGCAACATCATAAGTGTGATGTTAGCAAAAGAGGTACAAATAACAGAGCTCACATGGAGATCCATACTCAAATTCACTATACGAATTTTCTATCAACACATGTGATGAGGTCGAAAGCGTCTCAGGGCCAGGGTACGAAAGACCGGGTGGCAATCGAGAGAAAAACTGTTGCAGCTACCAGCGAAGATCGATTTAGTACGTTGCTGATGAAAGTGGAAAGAGACTCCGAGGACGAAGAAGCGGAAGAGGACGATCAGCTCGAAAGAGAAGTGGTAGCTCGCAAGGTCAACGAAGACTGGACAACGGATGCTGTGAAAACTGTTTTAGTGCCCGTTAGGGACCCAGTGACGCAACAGATCAGGAACATGTTGGTACCTGTCGAAGTGAGGGACAAAACTGGGTTAAACATGATCAAAAGTGTACTGGTACCGTTTCAGAGCAGCGATGGTTCGGTCTCGTACGAGATCAGGAAGGTGACAGTGCCGATCACGATCGAGTCGAAACTGCTGGAGAACGCTGACGACCCCAAAGAAGGGAAAGAGGACAACAAGGAGACCGATCGAAAAGAAGAGAGACAGGAAACAAGGACCGTTGAAGAGGTGAACGTGAAAGTGGAGCAGTTCCTGGACGAAGAGACCAAGTCGAACGACAGTCCAGGATCCGAGGACAATTTCGAGGTGATGGATCagaccctgaggaacagttgtccgttgtgtcagaagtgcttcaaggacgaacacgagatgcagaagcacgttcgtcggagccacaggaagcggtacagctgtgacaagtgtcagaagaggtgtatgtccgagcaggccctcgagaaacaccagaagacccacgtgggtgcttcgttcctgcagtgctctgtctgcaacttgaggtacaagaccaacgtggggctgaagaaccactatgtccgcgagcacagtagtttggatccgaagttcacctgcgactactgcggcaggtgcttcaagttgaagcacgatctgagcatccacatcgacaggacccacatgaacccggagtacatctgcaggttctgcggaagagccgtgaagaatatattgcaccacgaagcgacacacgaggaggaggtcaacaaaggcacatctcggtaccgttgcgatcactgtcctaaagacttcaagctgctgaacagactggccaaccatttgctgaagAAGCACAACGATCGCAGTCAGCCTAGCATGTTGAGGACGCTGTGCGAAAAGAATTTCCAGTCGAAGAAGGACTTCTATCGACATGTTCTAGCCGAGGATAGGATGAACAGAtataaatgtgacacctgcggaaagacttatgcgaacgagcagaatcttcgtagtcatgctgctgtacactcgcacaccttcgtgtgtcatctttgtagcaagaactttgctaataattactccttgaagttgcatcttcgaatgcatactggtgaacgaccttatcagtgcaaggtctgtttgaagacgttctcgaggaccaacgcgcttcgggtgcaccagttcacgcacaccggggagagaccgtatgtttgtgatctttgtggacagagtttcacgcaacggagtagcatgatgggtcatcgacgcaaacatcctggaaatcatccaccgcCTCCACCTTTGTCTCTCAGCAAGCTGGAACTCAACGAACATTTGACTTTGTGA
Protein Sequence: MARQHHKCDVSKRGTNNRAHMEIHTQIHYTNFLSTHVMRSKASQGQGTKDRVAIERKTVAATSEDRFSTLLMKVERDSEDEEAEEDDQLEREVVARKVNEDWTTDAVKTVLVPVRDPVTQQIRNMLVPVEVRDKTGLNMIKSVLVPFQSSDGSVSYEIRKVTVPITIESKLLENADDPKEGKEDNKETDRKEERQETRTVEEVNVKVEQFLDEETKSNDSPGSEDNFEVMDQTLRNSCPLCQKCFKDEHEMQKHVRRSHRKRYSCDKCQKRCMSEQALEKHQKTHVGASFLQCSVCNLRYKTNVGLKNHYVREHSSLDPKFTCDYCGRCFKLKHDLSIHIDRTHMNPEYICRFCGRAVKNILHHEATHEEEVNKGTSRYRCDHCPKDFKLLNRLANHLLKKHNDRSQPSMLRTLCEKNFQSKKDFYRHVLAEDRMNRYKCDTCGKTYANEQNLRSHAAVHSHTFVCHLCSKNFANNYSLKLHLRMHTGERPYQCKVCLKTFSRTNALRVHQFTHTGERPYVCDLCGQSFTQRSSMMGHRRKHPGNHPPPPPLSLSKLELNEHLTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00962000;
90% Identity: iTF_00964003; iTF_00962000; iTF_00962001; iTF_00962683;
80% Identity: -