Basic Information

Gene Symbol
stc_1
Assembly
GCA_963576845.1
Location
OY756248.1:302828-307324[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2 3.5e+04 -4.4 1.6 15 19 550 554 549 554 0.81
2 14 0.069 1.2e+03 0.6 0.2 4 10 583 589 582 590 0.95
3 14 6.7e-06 0.12 13.4 13.8 3 19 598 614 597 614 0.91
4 14 9.5e-07 0.017 16.1 17.9 1 18 650 667 650 668 0.97
5 14 1.8e-08 0.00032 21.6 9.5 1 19 706 724 706 724 0.98
6 14 1.4e-06 0.025 15.6 13.2 4 18 771 785 764 786 0.86
7 14 2 3.5e+04 -4.7 1.6 5 10 815 820 815 820 0.90
8 14 0.00058 10 7.2 8.4 1 11 826 836 826 837 0.97
9 14 1.5 2.6e+04 -3.7 0.6 4 10 841 847 840 847 0.86
10 14 4.2e-10 7.4e-06 26.8 12.6 1 19 853 871 853 871 0.98
11 14 0.27 4.7e+03 -1.3 1.7 5 10 899 904 893 905 0.90
12 14 2 3.5e+04 -8.7 11.6 10 19 918 928 907 928 0.71
13 14 5.2e-08 0.00091 20.1 12.1 1 16 964 979 964 990 0.85
14 14 8e-06 0.14 13.1 13.6 1 19 996 1015 996 1015 0.97

Sequence Information

Coding Sequence
ATGGCCACATGGGATGGTTCTGATTCTAAACCAGAAGACcaaaattattacacatatttcaaTCAAAATGTTGCTGGTTCTGCAACAGGGACATGGACATATTTTCCCAGCAATGTAAATAATGAATACTTGCAATCTAATCGTGAATATTATGTGCAAAATGAACCTTTATACGAACCCAATGGCCCAAATACTTCTCATCGCACGAATACAGATGGTTGGCCAATTCCATCTGTCACCAATCTTTATCAGAAACATGTAATGAGCATAGTAGGTAATTCTCAAGTATCAAGTAATCCGAAATGTTTTACAAATAATCAACGAAGTTTCGTATCTGAAAACTGTTGGAAGGACGATTACAATTCAGGAATAACCAAAACTAAACGCAATTCtatagaaaaaatgaaaaagccaAGTAATTCAAGTCTTCATGTTATGGCTGAAGAGTTTGTGCCAAATAATGTAGAATTGAATGATAAAAGATGCGATTTACAAAATACAAAGCCTGTCAGTACTATAAATTCTGTCAAAAATAGtaatgaaacattaaataaaCAGACATTTTATAACACAAGCAGGTTTGAAAGAAAATACAATActaaaaaaaatgcaaattataAACCTAGAGAAGGACAACAAGATCAATTTTATAGGCGAAATATGTACAAAAATTCTTTTCAGCAACAAGGGAAAGCTTCTCATAAATTTCACGGTAATAAGTATGTtactaataaatattacttGGATAAACCACAAATAGATGTAAAAAGCATAGATGAAAATATGTTAGATAAAGAAATGATGAATGATAATAGTGGTTGTAAAAGTAACGAATTTTCTACAACAAACTTAAATGAGAAAGAATTATCTTTAAATGCGgaaacaaatttgaataatgatAAACAAATTCTAAACAGTAATGAACAGACTACTACTGTTAGAAatgaaaatgtacaagaaagtaATACAAAGCAGTATAATAATCAGATTAAGGAATTTTCTTACTATAATTCTGGTTCAAAACAATTTCATAATAATCGTAGGACTACAAAGAAGTATTCGTATAATGTTAAATACAACAGAGAGGAAAGCACCTTTAAAGAAAAGAAACGGAATTATCAAGGATATAACAGAGAAAATTACAGTAAAGAGCATAAATTTAAGGTAAAGGAGCAAATGTATAGCAATGGTGAACATGATGAGTTTAAGGAGTGTTATGAGAAGGAAATTGGATCCGAAGCAAAGGATctaaaagaaaaaaagtataattatcaagGATTTAATGATTCAAAAgaatataataaagaaaataaaaatgaaatatttaaagaaaaagacaaaaataaaagttatgtatttgaaaataatgaCAAAGGAAATGAACATTGGAGTAACAAAAGAGAAAGTGCTGAAAAGAGTAGTATTCAAAAATggggaaaaaataaaaaatctcttGTTGATGATGATGCAAATCAAAGAGAGAGATTAGCGGATCAACTAAGTAGAGGACAATTGGAATGTTTAGTGTGTTGCGAATACATTAAACAGAATGATTATATTTGGTCATGTTCTAATTGCTTCCATGTTTTACACTTAAAATGTATCAAGAAATGGGCAAAATCGTCGCAAGTGGAAAATGGTTGGAGATGCCCAGCGTGTCAAAATATGAGTGTAACAATTCCTGAAAACTGTTTTTGCTTTTGTGGCAAAACAAAAGCACCTGAATGGAATCGTAGAGATGTTGCACATTCTTGTGGTGAAGTGTGTGGTAGAGTACTATCAAAAAATTGTACGCATAAATGTACTCTTTTGTGCCATCCAGGGTCTTGTCCACAATGTACAGCAATGGTAACGAAGTATTGTGGTTGCGGTAAAACATCGCAAACGGTACAGTGCAGTGCACATAAGTTACTGTTATGTGATTCTACATGTGATAAGGATTTAAATTGTGGTAAGCACAAATGTGAAAGGCGATGTCATcatggagaatgtggaaattgtgaGAAAACAATAATGCAAAGATGTTATTGTGGTAAAAATACCAGAGAAGTAACATGTCAAAGCAATATTTCTCTTACTTATTCTTGTCAAACTACTTGTAATAAGTTATTAGAATGTGGTAATCATACTTGTACAAAGTTATGCCATGCTGATGATTGCGAGTCTTGTTCTTTGACCCCAGAGAAAATTACAACTTGTTGTTGCGGACAAACGCCGTTAACAGAAAAGAGACAAAGTTGTTTAGATCCAGTTCCAGTTTGTGATAAAGTATGCTCTAAAAAACTAAAATGTGGACAACCTAATAATCCTCATACCTGTAAAGCAAAATGTCATCAAGGAGATTGCCCTACATGCGATTTAACTACAGATGTCAAATGTCGTTGCGGAAATATGGACAGAGAAATAGCTTGTAAAGACTTAACGTCAAAAGCTGATGATGCTCGGTGTGAAAAAAGATGTACAAAGAAAAGATCTTGTGGCAAGCATAAATGTAATCAGTTATGTTGCATAGAAATAGAACATATTTGTCCACTGGTGTGTTCCAAAACTTTAAGTTGTGGTAGACATAAATGTGAACAAAGTTGTCATAaagGAAGATGTCAATCTTGTTGGCATAGTAGTTTTGACGAATTATATTGTGAATGTGGAGCTGCTGTAATATATCCTCCTGTCCCTTGTGGTACGAGAAGACCTACTTGTGAAAGGCCATGTTCGCGTCAGCACTCGTGTGGACACGAAGTTCTTCATAATTGTCACAGTGAGCCAACATGTCCTCCTTGTACTGTTCTTACTCAGAGATGGTGCCATGGTAAACATGAACTCAGAAAAGCTGTTCCGTGTTATGTTACTGAAATTTCATGTGGTTTGCCATGTAATAAACCTATATCATGCGGTCGACATAAGTGTATTAGTATCTGTCATTCTGGCCCGTGTGAAAAACCAGGACAACAATGTTCACAACCTTGCACTAATCCTAGGGAAATGTGTGGTCACATTTGTGCAGCTCCGTGTCACGAGGGTAAATGCCCAGATACTCCGTGTAAGGAGATGGTAAAGGTAACATGTCAATGTGGACATAGATCTATGTCTCGTGTATGTGCAGAAAATTCTACAGAATATCAGAGAATAGCAAGCAGTATATTAGCTAGTAAAATGACTGATATGCAACTTGGTCACTCTATTAATTTGGAACAAGTTTTTGGTCAAGGAGCAAAGAAGCAGAATCAGTTGAAAACTTTAGAATGCAATGATGAATGTAAAATAATAGAACGTAATAGGAGGTTGACACTAGGTTTGCAGATTGCTAATCCAGATTTAAGCGGAAAATTAATGCCTAAATATAGCGATTTCATGAAACAGTGGGCTAAGAAGAACCCACAGTTTTGTCAAATGGTTCATGATAAATTAACAGAGTTAGTTCAACTAGCCAAAACTTCGAAACAGAAATCTCGTAGTTACTCTTTTGATTGTATGAACAAAGATAAGCGCCATTTTGTTCATGAGTCTTGCGAACATTTTGGTTGTGAAAGTCAGGCGTATGATCAAGAGCCGAAAAGAAATGTTGTTGCTACTGCTATAAAAGATAAGTGTTGGTTACCAAGCTACAGTTTACTAGAAATCGTGCAACGAGAAAATGGTCAAAGAAAAGTTCCAGGTCCAATGCTGAATACCTTAAAAACCGATGGACCTGTAAAaacaatatTATCACTGCCTACACAAAGAAGTCAAAAATCAGAAATACAGTCCACCGTGAAGACAGCTGAACCAGAAATAGATTACTTTGATTACCATGGTTAA
Protein Sequence
MATWDGSDSKPEDQNYYTYFNQNVAGSATGTWTYFPSNVNNEYLQSNREYYVQNEPLYEPNGPNTSHRTNTDGWPIPSVTNLYQKHVMSIVGNSQVSSNPKCFTNNQRSFVSENCWKDDYNSGITKTKRNSIEKMKKPSNSSLHVMAEEFVPNNVELNDKRCDLQNTKPVSTINSVKNSNETLNKQTFYNTSRFERKYNTKKNANYKPREGQQDQFYRRNMYKNSFQQQGKASHKFHGNKYVTNKYYLDKPQIDVKSIDENMLDKEMMNDNSGCKSNEFSTTNLNEKELSLNAETNLNNDKQILNSNEQTTTVRNENVQESNTKQYNNQIKEFSYYNSGSKQFHNNRRTTKKYSYNVKYNREESTFKEKKRNYQGYNRENYSKEHKFKVKEQMYSNGEHDEFKECYEKEIGSEAKDLKEKKYNYQGFNDSKEYNKENKNEIFKEKDKNKSYVFENNDKGNEHWSNKRESAEKSSIQKWGKNKKSLVDDDANQRERLADQLSRGQLECLVCCEYIKQNDYIWSCSNCFHVLHLKCIKKWAKSSQVENGWRCPACQNMSVTIPENCFCFCGKTKAPEWNRRDVAHSCGEVCGRVLSKNCTHKCTLLCHPGSCPQCTAMVTKYCGCGKTSQTVQCSAHKLLLCDSTCDKDLNCGKHKCERRCHHGECGNCEKTIMQRCYCGKNTREVTCQSNISLTYSCQTTCNKLLECGNHTCTKLCHADDCESCSLTPEKITTCCCGQTPLTEKRQSCLDPVPVCDKVCSKKLKCGQPNNPHTCKAKCHQGDCPTCDLTTDVKCRCGNMDREIACKDLTSKADDARCEKRCTKKRSCGKHKCNQLCCIEIEHICPLVCSKTLSCGRHKCEQSCHKGRCQSCWHSSFDELYCECGAAVIYPPVPCGTRRPTCERPCSRQHSCGHEVLHNCHSEPTCPPCTVLTQRWCHGKHELRKAVPCYVTEISCGLPCNKPISCGRHKCISICHSGPCEKPGQQCSQPCTNPREMCGHICAAPCHEGKCPDTPCKEMVKVTCQCGHRSMSRVCAENSTEYQRIASSILASKMTDMQLGHSINLEQVFGQGAKKQNQLKTLECNDECKIIERNRRLTLGLQIANPDLSGKLMPKYSDFMKQWAKKNPQFCQMVHDKLTELVQLAKTSKQKSRSYSFDCMNKDKRHFVHESCEHFGCESQAYDQEPKRNVVATAIKDKCWLPSYSLLEIVQRENGQRKVPGPMLNTLKTDGPVKTILSLPTQRSQKSEIQSTVKTAEPEIDYFDYHG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01122771;
90% Identity
iTF_00964170;
80% Identity
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