Basic Information

Insect: Mechanitis messenoides
Gene Symbol: RREB1
Assembly: GCA_959347415.1
Location: OY365759.1:33351446-33355480[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.6 2.4e+02 3.1 1.4 1 23 54 77 54 77 0.94

2 12 2.4 2.3e+02 3.2 0.2 2 12 109 119 108 129 0.80

3 12 0.018 1.7 9.9 0.1 1 23 254 276 254 276 0.97

4 12 0.00096 0.089 13.9 0.4 1 23 285 307 285 307 0.99

5 12 0.00059 0.055 14.6 2.0 1 23 313 336 313 336 0.97

6 12 0.0024 0.22 12.7 1.6 1 23 685 708 685 708 0.96

7 12 0.0002 0.019 16.1 1.3 2 23 899 920 898 920 0.97

8 12 0.02 1.9 9.7 5.3 1 23 926 949 926 949 0.97

9 12 0.17 16 6.8 1.4 1 23 980 1004 980 1004 0.90

10 12 0.35 33 5.8 0.1 1 23 1027 1050 1027 1050 0.85

11 12 0.0015 0.14 13.3 0.2 2 23 1090 1111 1089 1111 0.96

12 12 0.023 2.1 9.6 5.3 1 23 1117 1139 1117 1139 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.6	2.4e+02	3.1	1.4	1	23	54	77	54	77	0.94
2	12	2.4	2.3e+02	3.2	0.2	2	12	109	119	108	129	0.80
3	12	0.018	1.7	9.9	0.1	1	23	254	276	254	276	0.97
4	12	0.00096	0.089	13.9	0.4	1	23	285	307	285	307	0.99
5	12	0.00059	0.055	14.6	2.0	1	23	313	336	313	336	0.97
6	12	0.0024	0.22	12.7	1.6	1	23	685	708	685	708	0.96
7	12	0.0002	0.019	16.1	1.3	2	23	899	920	898	920	0.97
8	12	0.02	1.9	9.7	5.3	1	23	926	949	926	949	0.97
9	12	0.17	16	6.8	1.4	1	23	980	1004	980	1004	0.90
10	12	0.35	33	5.8	0.1	1	23	1027	1050	1027	1050	0.85
11	12	0.0015	0.14	13.3	0.2	2	23	1090	1111	1089	1111	0.96
12	12	0.023	2.1	9.6	5.3	1	23	1117	1139	1117	1139	0.97

Sequence Information

Coding Sequence: ATGAAGATCGAACATCATGAGTCACGCGGCACGCGCACGACCAGCATAGACAGTGACAACCGGTCCGACAGAAGCGAGGAAGATGACTGCAGAAGAGCACGGAAGAGAATGGCTTCTTCATCACCCTCTCCTATACCCTTGGATAAAAGAACTGCTAGATTCGAGTGCCGGAAGTGCTTACAGCGATTCGACTCGATTAATTCATTCGATCTTCATCGATTTACGGCCCACGGAGATGATAACAGGAGTGGATTTGAtgattatatagattattcaAGCAAAAAGTTTCAAAGTATGCTCCATCATCATATTCCTGATGGTTTGCGCTGCGAGCACTGCTCCCGGGAATTCCCAACTGGAcaaattttagatattcatAGAAAAACGTGTACATCTACAAGAATATCAAGCCCGGATCGCGATCGCAAAGAGTTTTTTGCGAAGCTTGATCTTAGGAATAGATCTTTTGGCATACCTGGAACTTTAACACCACCGATGGATCGCTTTACACCAAAATTTGATGACACCCATCTCTCTAATGGCATTAGGCATATCGATGCGGCCAGAGACCTTGCTGATATTCAATCCATATTGAATGTTACATCTGCTGGAAGTCTTTTAGAAAGACTTACTGGAAGCCGAGTAGCTTTAGAGAGCTCAGTGCTGACGCCTCCTGATACTATCATTAAAGAACGTGAACAAGAGGAAACACAAGATAATTTTGCAGCTGAATTTAGAAGAATGAAGCTTCGAGGAGAATTCCCTTGTCGACTGTGTCCCGCTAAATTTCCTAACCTTAGAGCACTGAAAGGTCATAATCGAGTACATCTAAGTGGCACTGGACCTGGTCCATATCAATGCAATATGTGTCCCCACGCATCTTTAGACAAAGCAGCTCTTGTCAGACACATGCGAACACACAATGGAGATAGACCATACGAATGCGCTGTCTGTAACTACGCATTTACAACAAAAGCTAATTGTGAGCGCCATTTACGAAATAGACATGCTAAGGTTACGAGAGAAGATGTTAAACGCTCTATCATATATCATCCCTCTGAAGACCCTAATAACGATGAAGTTAATTCTAAGCTGGCCCGGGAGGAGGTCAAAAGATCGCTTGCTTTCCATACCCCTGAAATTGATAGACGTAGTGAATCATCAGATCGAAATACTCCTCTGACTCATTACAACCCTAATTTTATTACCGACAGACACCCAGTCACTTCTTTAACCAAGGCTTTACCCGATACACCTACTTTAACTCCACGAGAGGCTGAGCAACCTATGCCAAGAATAAAGGTCAAGGGTATCGGGCAGTTGACCCAAATACCAGAATTTAGGTCTCCTGATCTTACATTTAAAGCAAACGACATCCAGCCAGAGCCATACAGTGAAGAAGCGCCAGTAGATCTTAGCACAAGTGATAACAACAGCTGCGACGTGCTCGATCTAAGTAAGAAAAAAAGAGATACAGATGACGACGAACCGAAGCTACCATCTCGTTCTGCTTTTGACGGTTCGGCATCTGCTGCCGCCACGGCCGCTGCTACTGCCTTTGAAAAGACTAGATTGCTTCTGACACAACAAAGACTTTTTGAATCTTCCCTACCAAAAATCGACCCCGCTTACTATGCAACTCAACTTTCTCAACTTTACGCTAGTGCAGTACCAGGTTTGCCTGGACTACCCCTACCACCGTCATTTCCAATAAACCCATATTTTCTACAAACTTCTTTTTTTCCTCATCCAACCGATTCTCAAgaaataactgaaataaagCAGCGTattcataaagaaatatttcgaGGTCTCAGTATGTCCGGAGGAAGATTGGTGGATGATGCTGAAACACCGCTTAAACAAGAACCAGAGGAAGAAGAACTTAAACCTATCCCAATATCTTCTACACCCACTCCTCCACCTCACGTCGAATCTCCTCGTCCGTTAAGCAACCCATTGGTTCCGCAAAATGACTCCGTCaaaatggtaataaaaaatggtataCTTATGCCAAAGCAAAAGCAAAGACGATACCGCACTGAGAGGCCCTTTTCTTGCTCTCAGTGTTCCGCAAGATTCACCCTGCGCTCAAATATGGAACGTCACGTCAAACAGCAACACCCTCAACACTGGAGTGTCAGACGTCCATCGCCGAGAGCTCCTCCTCCATATCCAAGTACTGACACTTTAGCCGACCGTGTCAAATATGCTTTACTGGCTCGTCACTTAGAAAGACCCTTGCAGGCTGATGGCTCTCCTGTCCGAAGAGATTCAGATGATGTAGCCGATAATGAAGAGGATGAAGATGATACTTTAGTTATAGATGAAGAACCGGAAGACCAAAAACCTGAAGACCATACCGCCGCTCGCATAGCTGCGGCTGAAATCCTTATGGCGTCACAACAACAAGAAATGCATAAGGATTTTGATCTTAAAATTGCTGGTAATCTTATCAACAAACCAGTCCCAATTGTAACTGACAAGACAGAAACTGCAACGGATCCTCTACCAAATCAAGATTCTATAGCAGTGGTTCCAACACGCAGCGATGAAGAAGAGGACGAGGAAGGTCTCGTTGCCTCTACGAGTGAGGGAAATAACTCTGGAAGTGATGAAAATAAATCTGAATCCGATACCGGAACGCAGCCACCAAAAAAGAAATCCGCTTATAGTTTAGCACCGAACCGCGTGTCCTGTCCGTACTGTCACCGAAAATTCCCCTGGTCTTCATCGCTCAGACGCCATGTCCTTACTCACACCGGTCAAAAACCTTTCAAATGCCCCCATTGCCCCCTCCTCTTTACAACGAAATCCAACTGCGATCGTCATTTACTTAGAAAACATGGAGGATCAGCCAAAGCAATACTCGCTGAACCGATACAAGATACCATAAGTCCTCAGAATAACGACAGCAGATCCGTACCAGAGAGACCGTTCAAATGTGCTTCCTGTCCAACGAGCACATTTTCATCTATGGAGACCTTAAAAAAGCACATGTCCTCCCGCCATGGTACCGGTGAATCCCAGCCGAGTTCCCCAAACCCGGACACAGAGGAAGGAGACGgaagtttagtttttaaatgtcatCTATGTGAGGCGTCGTTTGGGGATAGAACCGGAGCCCTGGGGCACTTAGCATCGGCTCACTCAGCGGAGTACGAACAGTTAGTGAGCAAAGGGGCTCTAGATGCTGTCAGTGATCGCAGCGAAAGCGCAGACGATGACGAGAGAGGAAAATTTCCTGATCACGCAAATAGGAAgGTTGTTTGTGCGTTCTGCGTGCGTCGTTTCTGGTCGGCTGAAGACCTCCGGCGCCACATGCGGACACACTCCGGCGAAAGACCCTTCGCCTGCGACCTCTGCCGGAGACGGTTCACTCTCAAACACAGCATGCTGCGACACCGGAAGAAACACCGCGACGACAGCGACGACGAGGACTCACCCAGGGACAATGGatattccTACCAGGACGACGAAGGCTCTGGCAACGAGATACCGACGAATGTCAACAACAACAACTCCCCGCCCGCCGTCTACGACAAAAAGTTGAAACTAGAAATGATTTCGCGCAAATATTCCTCCGAAAATGATAATGACACAGAGAATGGTGGCGACCTGATTGGGAAACTTCTTGGCATACCTGACAAGACCATTATTAATAAGCTGCTCTCCTCCGCGGACGAGGCTGCTAAGTTTCTAGGTGTCAATAAATGA
Protein Sequence: MKIEHHESRGTRTTSIDSDNRSDRSEEDDCRRARKRMASSSPSPIPLDKRTARFECRKCLQRFDSINSFDLHRFTAHGDDNRSGFDDYIDYSSKKFQSMLHHHIPDGLRCEHCSREFPTGQILDIHRKTCTSTRISSPDRDRKEFFAKLDLRNRSFGIPGTLTPPMDRFTPKFDDTHLSNGIRHIDAARDLADIQSILNVTSAGSLLERLTGSRVALESSVLTPPDTIIKEREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLAREEVKRSLAFHTPEIDRRSESSDRNTPLTHYNPNFITDRHPVTSLTKALPDTPTLTPREAEQPMPRIKVKGIGQLTQIPEFRSPDLTFKANDIQPEPYSEEAPVDLSTSDNNSCDVLDLSKKKRDTDDDEPKLPSRSAFDGSASAAATAAATAFEKTRLLLTQQRLFESSLPKIDPAYYATQLSQLYASAVPGLPGLPLPPSFPINPYFLQTSFFPHPTDSQEITEIKQRIHKEIFRGLSMSGGRLVDDAETPLKQEPEEEELKPIPISSTPTPPPHVESPRPLSNPLVPQNDSVKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPSPRAPPPYPSTDTLADRVKYALLARHLERPLQADGSPVRRDSDDVADNEEDEDDTLVIDEEPEDQKPEDHTAARIAAAEILMASQQQEMHKDFDLKIAGNLINKPVPIVTDKTETATDPLPNQDSIAVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTGTQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSAKAILAEPIQDTISPQNNDSRSVPERPFKCASCPTSTFSSMETLKKHMSSRHGTGESQPSSPNPDTEEGDGSLVFKCHLCEASFGDRTGALGHLASAHSAEYEQLVSKGALDAVSDRSESADDDERGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHRDDSDDEDSPRDNGYSYQDDEGSGNEIPTNVNNNNSPPAVYDKKLKLEMISRKYSSENDNDTENGGDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00986645;
90% Identity: iTF_00843043;
80% Identity: -