Mbor002621.1
Basic Information
- Insect
- Marronus borbonicus
- Gene Symbol
- -
- Assembly
- GCA_902655005.1
- Location
- LR737395.1:3791990-3792653[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4 2.6e+03 -1.3 0.1 58 66 7 15 3 18 0.71 2 4 0.05 96 3.3 0.5 30 39 50 59 30 67 0.50 3 4 1.6e-16 3.1e-13 49.7 1.4 7 70 87 150 82 150 0.97 4 4 2.3 4.4e+03 -2.0 0.1 54 60 155 161 152 162 0.81
Sequence Information
- Coding Sequence
- ATGGCATCAGCTataggaaaatgtaaaatatgtggGGAGCAATTAAGTTACGAACCTGACGATATTACCGCTTTCGGAAAACATCTAATTGAAAAACATAACGAGCAGATAACACATTTCCAATTTACAGGAAATGGCGCTCCTGAAATATGTGCATGTGGATGCGCCTGTGGATGCAACTGCAATCTGAATAAAAGAATCTCCAGAAAGGGCTATAAAACTACAGTTGAAACTTGGAAGCAAGGTGTGGTTTCTCAGGAATGTCCAAACTGTGGATTAACTGGGCTTCctttaataagaaaacaaaggaATAAAGTTTCTAGAAATTCTTTTGGTACACTTTGTTTAGTGGGCTGTTGGCCGCTTTGCTTCTTACCTTTCCTCCTGGGAGGCTCAGATACGATGTATCTCTTTTGTCAAGAGTGTGGTTATTTCCTGGGTACCTACGATAGAAAAACAGGCCGGATACATCATTCGTGTCCTATTGATTCCACTGAGTATGGAgctaaaatttgtaaatgtaaagaTGAAGGCTTctag
- Protein Sequence
- MASAIGKCKICGEQLSYEPDDITAFGKHLIEKHNEQITHFQFTGNGAPEICACGCACGCNCNLNKRISRKGYKTTVETWKQGVVSQECPNCGLTGLPLIRKQRNKVSRNSFGTLCLVGCWPLCFLPFLLGGSDTMYLFCQECGYFLGTYDRKTGRIHHSCPIDSTEYGAKICKCKDEGF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00626745;
- 90% Identity
- iTF_00626745;
- 80% Identity
- -