Mbor010187.1
Basic Information
- Insect
- Marronus borbonicus
- Gene Symbol
- -
- Assembly
- GCA_902655005.1
- Location
- LR737386.1:4144425-4150305[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5 4.1e+02 1.8 0.1 5 13 58 66 57 67 0.85 2 14 0.032 2.6 8.8 0.2 2 22 475 495 475 498 0.89 3 14 2.8e-05 0.0023 18.4 2.4 1 23 503 525 503 526 0.95 4 14 9.2e-05 0.0076 16.7 3.2 1 23 532 554 532 554 0.95 5 14 0.69 57 4.5 1.0 1 23 563 586 563 586 0.94 6 14 0.00073 0.06 13.9 8.0 1 23 593 616 593 616 0.95 7 14 0.00043 0.035 14.6 1.3 3 23 624 644 623 644 0.97 8 14 0.0078 0.64 10.7 3.9 1 23 649 672 649 672 0.95 9 14 0.0099 0.81 10.3 1.5 2 23 689 711 688 711 0.93 10 14 0.087 7.1 7.4 0.3 5 23 718 737 715 737 0.91 11 14 0.0041 0.34 11.6 7.2 1 23 743 765 743 765 0.98 12 14 0.00018 0.015 15.8 0.4 1 23 770 792 770 792 0.97 13 14 0.00044 0.037 14.6 0.6 1 23 798 820 798 820 0.97 14 14 0.058 4.7 7.9 2.1 1 23 826 848 826 848 0.97
Sequence Information
- Coding Sequence
- ATGGGAAAACCCGGTTGTGCGGTTCTATCTTGTCAACCGAATAAAACAGATTCGAGACATAGATTTCCAAACCCTTCGAAATATCCGGTATTGTTTTGGAAATggtttaatattgtaaataacaaatctTTGGCAAAATTGGACGATGGACGTATCTTCAATACTTACAGAGTGTGTGGGAAACACTTTTCACGAGAGGATATAAAATCCAATAATATATTACGAAGAGGAGCATATCCCACACTTTGCCTACCAGATGTTGGCGAAGGAACCGAACAACGAGCTGAGAAATTGAAACTCATTGATGAAGTAACTACTGCATCCAGTGGCAATATAGATTTACCAAGAGTCCACTCGACAGGTGTTCATAACAATATTACGCTTGAAGATCCTACACCGAgaGAGCAAGTAACCAACCAGGATTTACTTAGAACATTATTGGATGAGGTACCAGACTTACCAAAGCAGTTAGTAGATGCTGATGATCCTATTATAGATCTTTGCTCAGATGGACCAAATGATGCTATTCCGGTAGATAACACTCTACAACCTGTTTTATATATAGAACCTATGAAGGATAATACAATCAGCAAAGGTATTGTACAAACACATACAGAGAAGAAAGATACATTTAGCTTGTCACCTGACAATATTAGTAAGATATGTAGAACGTGTTTGAAAGAAAGGGAAGTTCTGGATATATATGAGCATAAATACGATGATGTGCCATTCTCTGAAATTATAGAATTGTGCACTCCAGTTAAGTTAGAAGAAGACGCCGCTCTCTCGAAAAACATATGCAAAATGTGTATTGGCGAACTACTACAAGCATATGACTTCCGCTTAAGATGCGATAAATCCGAAAAGACGTTAAAAGCCTTCCAAACTGAGCTTGCAAAATCGATAGCGCGTACGGAATCTTTACAAGAAGACTACGTGCCTCCATTTCTGCCCTTTCACGATTACGAAGCGACGTTAAATGAGGAGGAGGTTCAAAATACTATCCTCGCAAGGAAACGCGCtaatagaaaaagattttatcTAGTAAAAGGTCCCGCCGATGGCAAAGGGATAAAATTATCTGAAATCGacgaaaataatgctaaagcgTTAATGAACGATAGCACCCGGTCGTTAATGACTGTTAGAGTCGGAAACGCCCTTTGTAATCTTACGAAAGGAGTCTTAAAACCTGGACAGCAACTGACAAAGGCTGTAAAGGATAATTTGAAGAACGCGTTGGTTCGCAATCTGAATAAGCGGAAGATGCTAGCATATTCCCAATGGATAACACCTGCAATTCGATCGGTTATAGCTGGTAGACCCAGTCCCAATGTGCGCTTGTTAAAACCTAAGAAACCTAGAAAAAAGAAGCGCCCTCTTAGTGATAAACCTAAAGATCGCAAGCTTATCTTTCCGGGAGTATGCGAAATCTGTAACGAGCCTTATAATAATATAGACGAATATCGCCACCATGCCAATGTTACCAAGCACTACCTCAATCCTTACGTTTGCGAGAAATGCGGAAAAGTCTTCGGCGATAAGCACCGTTTGAAGACACATTGGGAGATCCACCACGAGACCAACGAAGCGCATATGTGTGAAATTTGCGGGAAACGCTTCAAGACCCGCAGTTACTTGCAATTCCATCTCAAAGGACACACTCAAACCGCCGCCAATAAGgaatttaaatgcaaaacatGCGGTGATGTCTATCTTAGGTTTCAAGATCTCATGCTGCATAATAGGAAAGTACATCCCACTACTGAAAAAAAGCATTGTTGCGAATTTTGCGGGGAGTTCTTCTCGAGAAAGGATACTTTGAGGCACCATAGGAATAGAGTGCACTTGAAAATCCAGCGTCAGTTTTGTCATATTTGTGGAAaagGTTACCTGTACAAGAGCTTGTTAAAGAAACATATGGTTGTCCATTCAACATTAAGGTTCGACTGCACCTTatgcaataaaacatttaaagcgGAACATCGGTATATGAGGCACATCAAAAATCAACATCCAGGCACCGATCCAAGtactaaagaagaaaatgagatcCTACAGATCACTTGTGCGATTTGCAATAAATCCTGTCGGAATAAACAGTTATACTCATTACATGGCCGGGAGGACCATGGTATAGCTTTCTGCATCTACTGTGATAGTAAATTCAAAACTGCAACGGACTTAGATGATCATATTAAAGAGGAACATAGtgaaattccagatttttcCTGTCGATATTGTGGGAAATGCTTCTCGGAGTCTCATCTGCTATACTTTCATTTACGAACACATAAGCCAAAGTACTATGAATGCTCCCTATGTTATAAAAAGTTTCCCAATAGTGTTCGATTGAGAATCCACATGGTTATACATACGAAAGAGAAACAGTATAATTGCAGTTATTGTGATAAGTCTTTTATGTATCGTGGCAGTGTTGTTATACATGAACGTCTTCATACTGGTGAACGGCCATATGTGTGTGATATTTGTGGAAAGGGTAACGTATGTTCCAGTTCATATAAAAGGCATCGACAGACTCACGCTCTACCAGTGGCAGTTAATAAAGtacttacaataaaaaatgaacaaaatctTGCAATAGAATCGCTTAATACAATAAGCGAAGGGGAACATCCAGAAGTAGAGTACGACATGTACACTGCAGTTAGTTGTAAGGAGTTTGACGGAATCAGCCTGGGTGAAGTGGAAATAGCTCagaactaa
- Protein Sequence
- MGKPGCAVLSCQPNKTDSRHRFPNPSKYPVLFWKWFNIVNNKSLAKLDDGRIFNTYRVCGKHFSREDIKSNNILRRGAYPTLCLPDVGEGTEQRAEKLKLIDEVTTASSGNIDLPRVHSTGVHNNITLEDPTPREQVTNQDLLRTLLDEVPDLPKQLVDADDPIIDLCSDGPNDAIPVDNTLQPVLYIEPMKDNTISKGIVQTHTEKKDTFSLSPDNISKICRTCLKEREVLDIYEHKYDDVPFSEIIELCTPVKLEEDAALSKNICKMCIGELLQAYDFRLRCDKSEKTLKAFQTELAKSIARTESLQEDYVPPFLPFHDYEATLNEEEVQNTILARKRANRKRFYLVKGPADGKGIKLSEIDENNAKALMNDSTRSLMTVRVGNALCNLTKGVLKPGQQLTKAVKDNLKNALVRNLNKRKMLAYSQWITPAIRSVIAGRPSPNVRLLKPKKPRKKKRPLSDKPKDRKLIFPGVCEICNEPYNNIDEYRHHANVTKHYLNPYVCEKCGKVFGDKHRLKTHWEIHHETNEAHMCEICGKRFKTRSYLQFHLKGHTQTAANKEFKCKTCGDVYLRFQDLMLHNRKVHPTTEKKHCCEFCGEFFSRKDTLRHHRNRVHLKIQRQFCHICGKGYLYKSLLKKHMVVHSTLRFDCTLCNKTFKAEHRYMRHIKNQHPGTDPSTKEENEILQITCAICNKSCRNKQLYSLHGREDHGIAFCIYCDSKFKTATDLDDHIKEEHSEIPDFSCRYCGKCFSESHLLYFHLRTHKPKYYECSLCYKKFPNSVRLRIHMVIHTKEKQYNCSYCDKSFMYRGSVVIHERLHTGERPYVCDICGKGNVCSSSYKRHRQTHALPVAVNKVLTIKNEQNLAIESLNTISEGEHPEVEYDMYTAVSCKEFDGISLGEVEIAQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121100; iTF_00627698; iTF_00626581;
- 90% Identity
- iTF_01121100;
- 80% Identity
- -