Dtit044778.1
Basic Information
- Insect
- Dynastes tityus
- Gene Symbol
- -
- Assembly
- GCA_029618875.2
- Location
- JAROYD020000011.1:25884903-25898202[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.082 9.5 8.5 0.3 3 22 423 442 422 445 0.89 2 13 0.00016 0.019 17.0 2.4 1 23 450 472 450 473 0.95 3 13 1.3e-06 0.00015 23.6 2.2 1 23 479 501 479 501 0.96 4 13 0.88 1e+02 5.3 1.1 1 23 510 533 510 533 0.95 5 13 0.0015 0.17 14.0 8.0 1 23 540 563 540 563 0.95 6 13 0.00087 0.1 14.7 1.3 3 23 571 591 570 591 0.97 7 13 0.016 1.8 10.8 3.9 1 23 596 619 596 619 0.95 8 13 0.47 55 6.1 2.3 2 17 636 651 635 658 0.76 9 13 0.64 74 5.7 0.1 5 23 665 684 662 684 0.91 10 13 0.045 5.2 9.3 6.7 1 23 690 712 690 712 0.97 11 13 0.00012 0.014 17.4 0.2 1 23 717 739 717 739 0.97 12 13 0.013 1.5 11.0 0.3 3 23 747 767 745 767 0.96 13 13 0.25 29 7.0 2.0 1 23 773 795 773 795 0.96
Sequence Information
- Coding Sequence
- atgTTAAATATATTTAGTGGGAAGTCAACCAATGTTCTAATTCGCCCATTCTTATTTCCAGATGTTGGTGAAGGAACCAACCAAGGAGCTGAGAAATCGAAACTGATTGATGAAGTAACTAGTACATCTGGTGGCAATATAGACTTACCCAAGGTCAACTCGACAAGTGTTCATAATAAAATTACGCTTGAAGATCCTACACCAAagGAGCAAGTATCCAACCAGGATTTACTTAGAACATTATTGGATGAGGTACCGAACTTACCAAAGCATGAAGACATCCAACGTAGAGCAAATGATGATATTCAAATAGTAGAAACGAATGATCCTGTTATAGATCTTTGTTCAGACGGAACAAATGATGCTAGTCTAATAGATGACACCCTACAACCTGTTTTGTATATAGAAACTGTGAAGGATAATACAATCAACAAAGTGGGTACGACAGAAACTTCAGAGAAGAAAGATACATTTAGTTTGTCACCCGATAATATTAGTAAGATATGTAGAACGTGTTTGAAAGAAAAGGAAGTTCTGGATATATATGAGCACAAATACAATGATGTGTCATTTTCTGAAATTATAGAATTGTGCACTCCGATTAAGTTAGAAGAAGACGCCGCTCTTTCGAAAAACATATGCAAAATGTGCATTGGCGAGCTGCTACAAGCATACGACTTCCGCTTAAGATGCGATAAATCCGAAAAGACGCTAAAGGCCTTTCAAACTGAGCTTGCAAAATCGATAGCGCGTACGGAATCCTTTCAAGAAGACTACGTGCCTCCATTTTTACCATTTCACGATTACGAAGCGACCTTGAACGAGGAGGAGGTTCAAAATACTATCCTCGCGAGGAAACGCGCTAACAGAAAGAGATTTTATCTAGTAAAAGGTCCCGTTAACGGAAAAGGGATAAAATTATCGGAAATCGACGAAAATAATGCTAAAGCCTTAATAAACGATAACACCCGATCGTTAATGACTGTTAGAGTCGGAAACGCCCTTTGTAATCTTACCAAAGGCGTCTTACAGCCTGGACAGCAATTGACGAAGGCTGTAAAGAATAATTTGAAGAACGCATTAGTTCGCAATCTGAATAAGCGGAAAATGTTAGCATATTCCCAGTGGATAACTCCTGCAATTCGATCGGTTATAGCTGGAAGACCCAGTCCCAACGTGCGGTTGTTAAAACCTAAGAAACCTAAAAAAAGGAAATGCCCTCTTGGTGATAAACCTAAGGATCGCAAACTTATCTTTCCGGGAATGTGCGAAATCTGTAACGAACCTTACAATAATATAGACGAATATCGCCACCATGCCAATGTTACCAAGCACTACCTCAATCCATACGTTTGCGAGAAATGCGGAAAAATCTTCGGCGATAAGCATCGTTTGAAGACACATTGGGAGATCCACCACGAGACTAACGAAGCACACATGTGTGAAATTTGCGGGAAACGCTTCAAGACCCGCAGTTACTTACAGATCCACCTTAAAGGGCATACACGAACCGACGTCAATAAGGAATTTAAGTGCAAAACGTGCGGAGATGTCTATCTTAGGTATCAAGATCTCATGCTACATAATAGGAAACTTCATCCCACTACAGAGAAAAAGCATTGTTGCGAATTTTGCGGGGAGTTCTTCTCGAGAAAGGACACTTTGAGGCATCACAGGAATAGAGTGCACTTGAAGATTAAGCGTCAGTTTTGTCATATTTGTGgaaaagGTTACCTATACAAGAGCTTGTTAAAGAAACATATGGTTGTCCATTCAACATTGAGGTTCGACTGCACCTTgtgcaataaaacatttaagGCGGAACATCGGTATATGCGGCATATAAAAAATCAACATCCAGGCACCGATCCAAGTACTAAAGAAGAAGATGAGATCCAATATATCACTTGTGAGATCTGCAATAAGTCCTGTCGGAATAAACAGTTACACTCATTACATGGTCGGGAGGATCATGATATAGCTTTCTGCATCTACTGTGATTCTAAATTCGAAACTGCAACAGACTTAGATGACCATATTAAGGAGGAACATAATGAAATTCCTGACTTTTCCTGTCGATATTGTGGGAGATGCTTCTCGGAATCACATCTGCTAtacttccatttacaaacacACAAGCCAAAATACTATGAATGCCCCCTATGCTACAAAAAGTTTCCCAATAGTGTTCGATTGAAGATCCACATGGTTATACATACGAAAGAGAAACTGTATGGTTGCAGATATTGTGATAAATCTTTTATGTACCGTGGCAGTGTTGTTATACATGAACGTCTTCATACTGGTGAACGACCTTATGTGTGTGATATTTGTGGAAAGGGTAACGTATGTTCTAGTTCATATAAAAGACATCGACAATCTCACACCCTACCAGTGGCAGTTAACAAAGTTACCAGTGATAAGctactaacaataaataatgaacaAGAAGCTGCAATAGAATCACTTAATACAATAAGTGAGGAGGAACATTCAGGGGTAGAGTATGAAATGTACACTGCGGTCGATTGTAAAGAGTTTGTTGAAATCAATCTGGCTGAAGCGGTAATAGTCCaggattaa
- Protein Sequence
- MLNIFSGKSTNVLIRPFLFPDVGEGTNQGAEKSKLIDEVTSTSGGNIDLPKVNSTSVHNKITLEDPTPKEQVSNQDLLRTLLDEVPNLPKHEDIQRRANDDIQIVETNDPVIDLCSDGTNDASLIDDTLQPVLYIETVKDNTINKVGTTETSEKKDTFSLSPDNISKICRTCLKEKEVLDIYEHKYNDVSFSEIIELCTPIKLEEDAALSKNICKMCIGELLQAYDFRLRCDKSEKTLKAFQTELAKSIARTESFQEDYVPPFLPFHDYEATLNEEEVQNTILARKRANRKRFYLVKGPVNGKGIKLSEIDENNAKALINDNTRSLMTVRVGNALCNLTKGVLQPGQQLTKAVKNNLKNALVRNLNKRKMLAYSQWITPAIRSVIAGRPSPNVRLLKPKKPKKRKCPLGDKPKDRKLIFPGMCEICNEPYNNIDEYRHHANVTKHYLNPYVCEKCGKIFGDKHRLKTHWEIHHETNEAHMCEICGKRFKTRSYLQIHLKGHTRTDVNKEFKCKTCGDVYLRYQDLMLHNRKLHPTTEKKHCCEFCGEFFSRKDTLRHHRNRVHLKIKRQFCHICGKGYLYKSLLKKHMVVHSTLRFDCTLCNKTFKAEHRYMRHIKNQHPGTDPSTKEEDEIQYITCEICNKSCRNKQLHSLHGREDHDIAFCIYCDSKFETATDLDDHIKEEHNEIPDFSCRYCGRCFSESHLLYFHLQTHKPKYYECPLCYKKFPNSVRLKIHMVIHTKEKLYGCRYCDKSFMYRGSVVIHERLHTGERPYVCDICGKGNVCSSSYKRHRQSHTLPVAVNKVTSDKLLTINNEQEAAIESLNTISEEEHSGVEYEMYTAVDCKEFVEINLAEAVIVQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00956566;
- 90% Identity
- iTF_00626581;
- 80% Identity
- -