Obor009461.1
Basic Information
- Insect
- Oryctes borbonicus
- Gene Symbol
- -
- Assembly
- GCA_902654985.1
- Location
- LR736876.1:713376-721961[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.029 2.5 8.8 0.2 2 22 468 488 468 491 0.89 2 13 2.6e-05 0.0022 18.4 2.4 1 23 496 518 496 519 0.95 3 13 0.00015 0.013 16.0 3.2 1 23 525 547 525 547 0.95 4 13 0.64 53 4.6 1.0 1 23 556 579 556 579 0.94 5 13 0.00067 0.056 13.9 8.0 1 23 586 609 586 609 0.95 6 13 0.0004 0.033 14.6 1.3 3 23 617 637 616 637 0.97 7 13 0.0072 0.6 10.7 3.9 1 23 642 665 642 665 0.95 8 13 0.0091 0.77 10.4 1.5 2 23 682 704 681 704 0.93 9 13 0.08 6.7 7.4 0.3 5 23 711 730 708 730 0.91 10 13 0.0038 0.32 11.6 7.2 1 23 736 758 736 758 0.98 11 13 0.00017 0.014 15.8 0.4 1 23 763 785 763 785 0.97 12 13 0.00041 0.034 14.6 0.6 1 23 791 813 791 813 0.97 13 13 0.053 4.5 8.0 2.1 1 23 819 841 819 841 0.97
Sequence Information
- Coding Sequence
- ATGCGTTGTTGTTCTATCAAATATTGCAAGAATCAGATTTCATACCATCGTTTTCCTAATCCAAAGAAACATTTAGATAGGCTGAAGGTTTGGTTACAATACTGCGAGGATGAGTTGTTAAGTTATACTCTGGAAACTATTTATAAGAATCGGAGAGTATGCAAAGTGCATTTTACACAAGATCAATTTAGCAATGGTAAATTAAAACAGACTGCATATCCTGTGTTACATATTCCAGATGTTGGCGAAGGAACCGAACAAGGAGCCGAGAAATTGAAACTCATCGATGAAGTAACTACTGCATaCGGTAGCAATATAGATTTACCAAGAGTCAACTCGACAGGTGTTCATAACAATATTACGCTTGAAGATCCAACGCCAAgaGAGCAAGTAACCAACCAGGATCTACTTAGAACATTATTGGATGAGGTACCAGACTTACCGAAGCAGTTAGTAGATACTGATGATCCTATTATAGATCTTTGCTCGGATGGACCAAATGATGCTACTACAGTAGATAACACTTTACAACCTCTTTTATATATAGAACCTACGAAGGATGATACAATCGGCAAAGGCATCGTACAAACTCCAGAGAAGAAAGACACATTTAGCTTGTCACCTGATAATATTAGTAAGATATGTAGAACGTGTTTGAAAGAAAGGGAAGTTCTGGATATATATGAGCATAAATACGATGATGTGGCATTCTctgaaattatagaattgtgCACTCCGATTAAGTTAGAAGAAGACGCCGCTCTCTCGAAAAACATATGCAAAATGTGTATCGGCGAACTACTACAAGCATATGACTTCCGCTTGAGATGCGATAAATCCGAAAAGACGTTAAAAGCCTTCCAAACTGAGCTTGCAAAATCGATAGCGCGTACGGAATCTTTACAAGAAGACTACGTGCCTCCATTTTTGCCTTTTCACGATTACGAAGCGACTTTAAACGAGGAGGAGGTTCAAAATACTATCCTCGCAAGGAAACGCGCtaatagaaaaagattttatctAGTAAAAGGTCCCGCCGATGGAAAAGGGATAAAATTATCCGAAATCGacgaaaataatgctaaagcgTTAATGAACGATAGCACCCGGTCGTTAATGACCGTTAGAGTCGGAAACGCCCTTTGTAATCTTACGAAAGGAGTCTTAAAACCTGGACAGCAACTGACGAAGGCTGTAAAGGATAATTTGAAGAACGCGTTAGTTCGCAATCTGAATAAGCGGAAGATGCTAGCGTATTCCCAATGGATAACACCTGCAATTCGATCGGTTATAGCTGGTAGACCCAGTCCCAATGTGCGCTTGTTAAAACCTAAGAAACCTAGAAAAAGGAAGCGCCCTCTTAGTGATAAACCTAAAGATCGCAAGCTTATCTTTCCGGGAGTATGCGAAATCTGTAACGAGCCTTATAATAATATAGACGAATATCGCCACCATGCCAATGTTACCAAGCACTACCTCAATCCTTACGTTTGCGAGAAATGCGGAAAAGTCTTCGGCGATAAGCATCGTTTGAAGACGCATTGGGAGATCCACCACGAGACCAACGAAGCGCATATGTGTGAAGTTTGCGGGAAACGCTTCAAGACCCGCAGTTACTTGCAATTCCACCTCAAAGGACATACTCAAACCGCCGCCAATAAGgaatttaaatgcaaaacatGCGGTGATGTCTATCTTAGGTTTCAAGATCTCATGCTGCATAATAGGAAAGTACATCCCACTACTGAAAAAAAGCATTGTTGCGAATTTTGCGGGGAGTTCTTCTCGAGAAAGGATACTTTGAGGCACCATAGGAATAGAGTGCACTTGAAAATCCAGCGTCAGTTTTGTCATATTTGTGGAAaagGTTACCTGTACAAGAGCTTGTTAAAGAAACATATGGTTGTCCATTCAACATTAAGGTTCGACTGCACCTTatgcaataaaacatttaaagcgGAACATCGGTATATGAGGCACATCAAAAATCAACATCCAGGCACCGATCCAAGTACTAAAGAAGAAAACGAGATCCTACAGATCACTTGTGCGATTTGCAATAAATCCTGTCGGAATAAACAGTTATATTCATTACATGGCCGGGAGGATCATGGTATAGCTTTCTGCATCTACTGTGATAGTAAATTCAAAACTGCAACAGACCTAGATGATCATATTAAAGAGGAACATAgtgaaattccagatttttccTGTCGATATTGTGGGAAATGCTTCTCGGAGTCTCATCTGCTATACTTTCATTTACGAACACATAAGCCAAAGTACTATGAATGCTCCCTATGTTATAAAAAGTTTCCCAATAGTGTTCGATTGAGAATCCACATGGTTATACATACGAAAGAGAAACAGTATAATTGCAGTTATTGTGATAAGTCTTTTATGTATCGTGGCAGTGTTGTTATACATGAACGTCTTCATACTGGTGAACGGCCATATGTGTGTGATATTTGTGGAAAGGGTAACGTATGTTCCAGTTCATATAAAAGGCATCGGCAGACTCACGCTCTACCAGTGGCAGTTAATAAAGtacttacaataaaaaatgaacaaaatctTGCAATAGAATCGCTTAATACAATAAGCGAAGGGGAACATCCGGAAGTAGAGTACGACATGTACACTGCAGTTAGTTGTAAGGAGTTTGACGGAATCAGCCTGGGCGAAGTGGAAATAACTCagaactaa
- Protein Sequence
- MRCCSIKYCKNQISYHRFPNPKKHLDRLKVWLQYCEDELLSYTLETIYKNRRVCKVHFTQDQFSNGKLKQTAYPVLHIPDVGEGTEQGAEKLKLIDEVTTAYGSNIDLPRVNSTGVHNNITLEDPTPREQVTNQDLLRTLLDEVPDLPKQLVDTDDPIIDLCSDGPNDATTVDNTLQPLLYIEPTKDDTIGKGIVQTPEKKDTFSLSPDNISKICRTCLKEREVLDIYEHKYDDVAFSEIIELCTPIKLEEDAALSKNICKMCIGELLQAYDFRLRCDKSEKTLKAFQTELAKSIARTESLQEDYVPPFLPFHDYEATLNEEEVQNTILARKRANRKRFYLVKGPADGKGIKLSEIDENNAKALMNDSTRSLMTVRVGNALCNLTKGVLKPGQQLTKAVKDNLKNALVRNLNKRKMLAYSQWITPAIRSVIAGRPSPNVRLLKPKKPRKRKRPLSDKPKDRKLIFPGVCEICNEPYNNIDEYRHHANVTKHYLNPYVCEKCGKVFGDKHRLKTHWEIHHETNEAHMCEVCGKRFKTRSYLQFHLKGHTQTAANKEFKCKTCGDVYLRFQDLMLHNRKVHPTTEKKHCCEFCGEFFSRKDTLRHHRNRVHLKIQRQFCHICGKGYLYKSLLKKHMVVHSTLRFDCTLCNKTFKAEHRYMRHIKNQHPGTDPSTKEENEILQITCAICNKSCRNKQLYSLHGREDHGIAFCIYCDSKFKTATDLDDHIKEEHSEIPDFSCRYCGKCFSESHLLYFHLRTHKPKYYECSLCYKKFPNSVRLRIHMVIHTKEKQYNCSYCDKSFMYRGSVVIHERLHTGERPYVCDICGKGNVCSSSYKRHRQTHALPVAVNKVLTIKNEQNLAIESLNTISEGEHPEVEYDMYTAVSCKEFDGISLGEVEITQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00956566;
- 90% Identity
- iTF_00956566;
- 80% Identity
- -