Mbor006335.1
Basic Information
- Insect
- Marronus borbonicus
- Gene Symbol
- -
- Assembly
- GCA_902655005.1
- Location
- LR737380.1:16400766-16416107[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.02 1.7 9.4 4.1 1 23 167 189 167 189 0.98 2 15 1.4e-05 0.0012 19.3 5.6 1 23 194 216 194 216 0.98 3 15 3e-05 0.0025 18.3 3.2 1 23 222 244 222 244 0.97 4 15 0.04 3.3 8.4 0.8 3 21 252 270 250 270 0.94 5 15 2.5e-06 0.00021 21.6 0.2 1 23 278 300 278 300 0.98 6 15 0.0072 0.59 10.8 0.7 1 23 471 493 471 493 0.95 7 15 9e-05 0.0073 16.8 2.9 1 23 498 520 498 520 0.98 8 15 8.3e-07 6.8e-05 23.2 6.4 1 23 526 548 526 548 0.98 9 15 8.9e-05 0.0073 16.8 3.0 1 23 588 610 588 610 0.98 10 15 4.1e-06 0.00033 21.0 4.4 1 23 616 638 616 638 0.98 11 15 3.1e-07 2.5e-05 24.5 0.4 1 23 645 667 645 667 0.96 12 15 5.3e-06 0.00043 20.6 2.2 1 23 673 695 673 695 0.98 13 15 9.4e-07 7.7e-05 23.0 0.5 3 23 703 723 701 723 0.96 14 15 8.8e-06 0.00072 19.9 0.3 1 23 729 751 729 751 0.99 15 15 0.0047 0.38 11.4 0.3 1 23 756 779 756 779 0.97
Sequence Information
- Coding Sequence
- ATGGAGTCTATACAATTAGATTTCGACAATGTGTGCAGAACTTGCAAAAATGAATCGCCAGAAATGAAGTCATTGTACTATAGAGACTCGGAAAGTGGCAAAGAAAACCCCCGTTTAGACGAGATGCTAATGGCATGTGCTTCCGTTCAGgttAACAAGGACGACGGTTTACCAAAATTGATATGTCGATCGTGTtttgtgcaattaaaaaatgcatattctTTCAAGGAACAATGCGAAAAAACGAATATCTTTTTGAGAGATTACGTGAAAAATTTACAGAAGGAAAATATAAAGGAGGAACCTGTAGCAGAGTtggaattttcaacaaatttgaCAAACGAACTTGATACAACTTTAGATGATGACGATGATGACAGTTGTAATAGAAATGAAGATATCATAGATTATATTAAAGATGATCCCGAAAATAATTCAGGAGAAGTACGAGAAAAAGATTTAGATCATATTCAGgtAACTGATAGTGATATAACAGTTTACGAATGCACAACatgttcaaaagtattttatacTATGGAAGGTCTAAAATGCCATAAAAGGTCGCACACTGGtaaaactttcaaatgtaagcATTGTGGTAGAGCCTATACAAGATTGAATCATCTCCGTAGACATGAATTATCTCATGGCAAGCGGAAAATGCATGTCTGTAAGATATGCAATAAAACCCTTACCAGGTTTGAATATTTGAAACGTCATCTGATaacacatttgaaaaaaaagccTTATGGCTGCCCACGTTGCAACCGTGGTTTTAATCGTGTGGAACGTCTTCAACACCACACCAAATGTTGCAAAGGGGAAAAAGTGTATGTATGTGATATTTGCAATAAGGCCTTTAATCGAGAGGATAGTATGGAAGTACACAGACGgatacatgaaaataaaaagcttGTTCTACCAACTTTAGATAATTTAGACAACATAGCAGAACATTATATGGAAATTGAGTTCGATGAAAAAGCTGATATATTTTCGGAGCAACCTGAAGAAGTAGACATGAATTCAGGGGAAGAGATAATGGAGCCAGAAGTTGAGATTTCAGAAAATAACGACCAAGGGAAAATAGATGAAATAGCACACATAACTAATGATATTTATGAAAAGGAGGATTCCGCAGATTTGCTACTTGAAAAAACAAGAATTCAGGAAGAAATACTTGGAAATAATCAAGATGGACTTTTAGATATTGGTAATGGAAATGATTACGAATCTGATAATAGTGCTCATTCCGAATGTTTACCGATGACACCGCCACCGCCAAAAACCAAACGCGGTAGGGGAAGACCTGGCAAACATCCTGTAGCTTATAAGTCTATTGGCAGGCCAAGAGGGTGCCCTCCTCTAAATTACAAACCTCAAACTGGTAAGGGCTCGGAAACTGGCCATTTCATATGTCCGGAGTGTAAGGAACTCTTCACCAAGGTGCATCTATTCGAAAGGCACGTTGAAGAGCATGGTTTGAAGCTGTACGAATGTGATACATGTTCTAGGAAATTTAGTAGGATGAATAGTCTTAAGAGGCATAAATTATCCCATGGGAAAGCAAAGCCGTTCTCGTGTTCGTCGTGTAAAAAACGCTTCTCAAGGCGGGATCATTTGCAGAAGCATATGAGAATGCATCTCAGCTCCGAATCCTTTACATGTGATATACGCCAGATCagtaaaaaagagaatttagtAAAGCATAAAGCTGTTAAACATAGCATCGGTGAGAAAATATTGTTAGACGAGAATAaattcaaatgcaaatattgtCCAAAGGCTTTCACGACCGAGAAATATCGCGATTCGCATATGAAGTCCCATTGGGGGGAGAATGCATTCCAGTGTAAGACCTGTAATAAGTCTTTTATAGCGAAATCTCATTTAACCGAGCATATGAAGTATCATAATGATAGTTCGAAGAAATTTTTGTGTTCCGAGTGTGGACAGAGATTTATTAGGAATGACAATTTGGTGGTTCATATGAGGCGGCACCGCGGAGAGAAACCATTCAAGTGCAAATTCTGTGGTAAAGGTTTTACTCGAACGACAGATTTGACAGTGCATGAGAGATATCATACTGGCGAAAAGACGCATTTGTGTGTTATTTGTGGAAGAGGTTTTGGAAGgGCATATAACTTGACAGTTCATATGAGAACCCATACCGGAGAGAAGCCTTATCGCTGCACATATTGTGATGCAGCCTTTGCCCAGGGTAACGATTTGAAGTCACACATTCGAAGACACACGGGCGAAAGATTCCAGTGTGAACTGTGTCCAGAAACATTCTTAACGGGATATTTATTAACTCAACACAAGAGAGTTGTtcacggtTTAAATATTGTCAGCAACATAAGGCGATTGCAACCAGTTGCGAAATTAAACCCGGATGACCCTCCCCCGATCACAGTACCGCTGCCTGCACCTGTTGTAGTAGCACCTGCTATTAAAGTGGATCCTCTACAAATAAAACAGGAAGATTTGTCTGAACTAAAGCAAGAGTAG
- Protein Sequence
- MESIQLDFDNVCRTCKNESPEMKSLYYRDSESGKENPRLDEMLMACASVQVNKDDGLPKLICRSCFVQLKNAYSFKEQCEKTNIFLRDYVKNLQKENIKEEPVAELEFSTNLTNELDTTLDDDDDDSCNRNEDIIDYIKDDPENNSGEVREKDLDHIQVTDSDITVYECTTCSKVFYTMEGLKCHKRSHTGKTFKCKHCGRAYTRLNHLRRHELSHGKRKMHVCKICNKTLTRFEYLKRHLITHLKKKPYGCPRCNRGFNRVERLQHHTKCCKGEKVYVCDICNKAFNREDSMEVHRRIHENKKLVLPTLDNLDNIAEHYMEIEFDEKADIFSEQPEEVDMNSGEEIMEPEVEISENNDQGKIDEIAHITNDIYEKEDSADLLLEKTRIQEEILGNNQDGLLDIGNGNDYESDNSAHSECLPMTPPPPKTKRGRGRPGKHPVAYKSIGRPRGCPPLNYKPQTGKGSETGHFICPECKELFTKVHLFERHVEEHGLKLYECDTCSRKFSRMNSLKRHKLSHGKAKPFSCSSCKKRFSRRDHLQKHMRMHLSSESFTCDIRQISKKENLVKHKAVKHSIGEKILLDENKFKCKYCPKAFTTEKYRDSHMKSHWGENAFQCKTCNKSFIAKSHLTEHMKYHNDSSKKFLCSECGQRFIRNDNLVVHMRRHRGEKPFKCKFCGKGFTRTTDLTVHERYHTGEKTHLCVICGRGFGRAYNLTVHMRTHTGEKPYRCTYCDAAFAQGNDLKSHIRRHTGERFQCELCPETFLTGYLLTQHKRVVHGLNIVSNIRRLQPVAKLNPDDPPPITVPLPAPVVVAPAIKVDPLQIKQEDLSELKQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00627466;
- 90% Identity
- iTF_00956461; iTF_01121027; iTF_00627466;
- 80% Identity
- -