Mbor007620.1
Basic Information
- Insect
- Marronus borbonicus
- Gene Symbol
- -
- Assembly
- GCA_902655005.1
- Location
- LR737380.1:16418152-16424051[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.02 1.7 9.4 4.1 1 23 167 189 167 189 0.98 2 16 0.00027 0.022 15.3 5.7 1 23 194 216 194 216 0.98 3 16 3.6e-05 0.003 18.0 5.1 1 23 222 244 222 244 0.97 4 16 0.0049 0.4 11.3 1.3 3 19 252 268 250 270 0.95 5 16 2.5e-06 0.00021 21.6 0.2 1 23 278 300 278 300 0.98 6 16 0.011 0.88 10.2 0.3 1 23 471 493 471 493 0.95 7 16 1e-05 0.00086 19.7 2.1 1 23 498 520 498 520 0.98 8 16 2e-06 0.00016 22.0 8.6 1 23 526 548 526 548 0.98 9 16 0.00027 0.022 15.3 0.5 1 23 554 577 554 577 0.95 10 16 0.00013 0.01 16.3 1.3 1 23 590 612 590 612 0.98 11 16 8.3e-06 0.00068 20.0 4.6 1 23 618 640 618 640 0.98 12 16 1.2e-06 0.0001 22.6 0.5 1 23 647 669 647 669 0.96 13 16 9.1e-06 0.00075 19.9 1.3 1 23 675 697 675 697 0.98 14 16 9.4e-07 7.8e-05 23.0 0.5 3 23 705 725 703 725 0.96 15 16 2.9e-05 0.0024 18.3 0.3 1 23 731 753 731 753 0.99 16 16 0.039 3.2 8.5 0.2 1 23 758 781 758 781 0.96
Sequence Information
- Coding Sequence
- ATGGAGTCTATACAATTAGATTTCAACAATGTGTGCAGAACCTGCAAAAATGAATCGCCAGAAATGAAGTCATTGTATTATAGAGACTCGGAAAGTGGCAAAGAAAACCCCCGTTTAGACGAGATGCTAATGGCATGTGCTTCCGTTCAGgttAACAAGGACGACGGTTTACCAAAATTGATATGTCGATCGTGTtttgtgcaattaaaaaatgcgTATTCTTTCAAGGAACAATGCGAAAAGACGGATATCTTTCTGAGAGATTACGTGAAAAATTTACAGaaggaaaatataaaggaagaaaatgCTGTAACAGAGTtggaattttcaacaaatttgatAAACGAACTTGATACAACTttagatgatgatgatgacagTTGCAATAGAAATGTAGATATCATAGATGATATCAAAGATGATCCAGAAAATAATTCAGGAGAAGTACGAGAAAAAGATTTGAATTATATTCAGGTAATTGACAGTGATATAACAGTTTACGAATGCACAACATGTTCAAAAGTTTTTTATACTATGGAAGGTCTAAAATGTCATAAAAGGTCCCACACTGGTAAAACCTTCAAATGTAAGCAATGCGATAGAGCCTACACAAGATTGAATCATCTCCATAGGCATGAATTATCTCATGGCAAGCGAAAAATGCATGTCTGTAAGATATGCAATAAAACGCTAACCAGGTTCGAACATTTGAAACGTCATCTAATAACACATTTGAAAGAAAAGCCTTATGGCTGCCCGCGCTGTAACCGTGGTTTTAATCGTTTTGAACATCTTCGTCACCATGCGGAATGTTGCAAAGGGGAAAAGGTATATGTATGTGATATTTGCAATAAAGCCTTTAATCGAGAGGATAGTATGGAAGTACATAGGCGGATACATGAAAATAAGGAACTTGTTCTACCAACTTTAGATAATTTAGACAACATAGCAGAACATTATATGGAAATCGAGTTTGATGAAAAAGCTGACGAATTTTCTGAGCAATCCGAAGAAGTAGACATGAATTCAGGAGAAGAAACAATGGAGCCAGAAGTTGAGGTTTCAGAAAATAACGACCAAGAGAAAATAGATGAGATAGCACACATAACTAATGATATTTACGAAAAGGAAGATCCTGCAGATTTACTACTTGAGAAAGCAAGAATCCAGGAAGAAATACTTGGAGATAATCAAGCTGGACTCTTGGACATTGGTAATGGAAATGATTATGAATCAGATAATAGTGCCCATTCCGAATATTTACCGATGAAACCGTCACCGCCAAAAACCAAACGCGGTAGGGGTAGACCTCGCAAACATCCTGTAGCTTACAAGTCTACCGGCAGGCCAAGAGGGCGTCCTCCTCTGAATCACAAACTTAAAACTGATAAGGGCTCGGAAACTGGCCATTTCATATGTCCGGAGTGTAAGCAACTCTTCACCAAGGTGAATCTATTCGAAAGGCACGTTGAAGAGCATGGTTTGAAGCTGTACGAATGTGATACATGTCCGAAGAAATTTAGTAGGATGAATAGTCTTAAGAGGCATAAATTATCCCATGGGAAAGTGAAGCCGTTCTCGTGTTCGTCGTGTAAAAAATGCTTCTCAAGGCGGGATCATTTGCAGAAGCATATGAGAATGCATCTCAACTCCGAATCGTTTACATGTGATATATGCCAGGTGACATTTAGTAAAGAAGAGAGTTTACTAAAGCATAAAGCTGTTAAGCATAGCATTGGTGAGAAAATATTGTTAGCCGAGAAGAAATTCAAATGCGAATATTGTCCAAAGGCTTTCACAACCGAGAAATACCGCGATTCGCATATGAAGGCCCATCTGGGGGAGAATGCATTCCAGTGTAAGACCTGTAATAAGTCTTTCATAGCGAAATCTCATTTAACCGAGCATATGAAGTTTCATAATGATAGTTCGAAGAAATTCTTGTGTTCCGAGTGCGGACAGAGATTTATTAGGAATGACTATTTGGTGGTTCATATGAGGCGGCACCGCGGAGAGAAACCATTCAAGTGCAAATTCTGTGGTAAAGGTTTTCCTCGAACGACAGATTTGACAGTGCATGAGAGGTATCATACTGGCGAAAAGACGCATTTATGTGTTATTTGTGGAAGAGGATTTGGAAGgGCATATAACTTGACAGTTCATATGAGAACCCACACCGGAGAGAAGCCTTATCGCTGCACATATTGTGATGCAGCTTTTGCCCAGGGTAACGATTTGAAGTCACACGTTCGAAGACACACGGGCGAAAGATTCCAGTGTGAATTATGTCCAGAAACATTCTTAATGGGATATTTATTAACTCAACACAAGAGAGTTGTTcacggtTTAAATATAGTTAGCAACATAAGGCGATTGCAACCAGTTGCGAAATTAAACCCGGATGACCCTCCCCCTATCACAGTACCACTGCCTGCACCTGTTGTAGTAGCACCTGTTATTAAAGTGGATCCTCTACAAATAAAACAGGACGATTTGCCTGAACTAAAACAAGAGTAG
- Protein Sequence
- MESIQLDFNNVCRTCKNESPEMKSLYYRDSESGKENPRLDEMLMACASVQVNKDDGLPKLICRSCFVQLKNAYSFKEQCEKTDIFLRDYVKNLQKENIKEENAVTELEFSTNLINELDTTLDDDDDSCNRNVDIIDDIKDDPENNSGEVREKDLNYIQVIDSDITVYECTTCSKVFYTMEGLKCHKRSHTGKTFKCKQCDRAYTRLNHLHRHELSHGKRKMHVCKICNKTLTRFEHLKRHLITHLKEKPYGCPRCNRGFNRFEHLRHHAECCKGEKVYVCDICNKAFNREDSMEVHRRIHENKELVLPTLDNLDNIAEHYMEIEFDEKADEFSEQSEEVDMNSGEETMEPEVEVSENNDQEKIDEIAHITNDIYEKEDPADLLLEKARIQEEILGDNQAGLLDIGNGNDYESDNSAHSEYLPMKPSPPKTKRGRGRPRKHPVAYKSTGRPRGRPPLNHKLKTDKGSETGHFICPECKQLFTKVNLFERHVEEHGLKLYECDTCPKKFSRMNSLKRHKLSHGKVKPFSCSSCKKCFSRRDHLQKHMRMHLNSESFTCDICQVTFSKEESLLKHKAVKHSIGEKILLAEKKFKCEYCPKAFTTEKYRDSHMKAHLGENAFQCKTCNKSFIAKSHLTEHMKFHNDSSKKFLCSECGQRFIRNDYLVVHMRRHRGEKPFKCKFCGKGFPRTTDLTVHERYHTGEKTHLCVICGRGFGRAYNLTVHMRTHTGEKPYRCTYCDAAFAQGNDLKSHVRRHTGERFQCELCPETFLMGYLLTQHKRVVHGLNIVSNIRRLQPVAKLNPDDPPPITVPLPAPVVVAPVIKVDPLQIKQDDLPELKQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00627466;
- 90% Identity
- iTF_00956465;
- 80% Identity
- -