Mbra006564.1
Basic Information
- Insect
- Mamestra brassicae
- Gene Symbol
- -
- Assembly
- GCA_905163435.1
- Location
- LR990992.1:1712891-1714972[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.2e-08 2.1e-05 24.9 0.0 2 40 16 54 15 60 0.88
Sequence Information
- Coding Sequence
- ATGCCTGGCAATTACAAACGAAAATCGACGCGGAAAAGTTGGTCTCAAGAAGACATGAATGAGGCTATTAAGGCTGTAAAGGACAATAAGATGGGTTGGCTTTTAGCATCGAAACATTTTAATGTGCCACAAGCGACTCTTCGTCGCCATTATTATAGAACTCCAGTAAATCTTGGACGTTTTAAACCAACTTTTAACGCAGAAATGGAAAAAATGCTTGTAGATCACATGCTCGAGTTCGAAAGTCGACTTTTTGGATTTAATACAACCGAAATAAGAAAATTAGCTTTCGAATTTGCGGAAAAATTGGGACTGGATCACAGATttgataagaataaaaaaatagctggCTGGGATTGGCTGAAAGGGTTTAGAGAACGTAACCCAAATATCTCTCTCAGAGCTCCAGAACCAACTTCAGCTGCAAGAGCAAGGGCATTTAATAAACCTCAAGTAATGAAATTTTTTTCCCTTTTGGAAAAAACGGTGACTGATAATGGTATTAAAGCACATAGAATTTACAATATGGACGAGTCTGGACTCAACACTGTTCAAAAGCCACCAAAAGTGTTTGCATCCAAAGGGAAAAAACAAGTCGGTGCTGTTACTAGTGCTGAACGTGGTGAACATTTCACAGTTGTTGCCTGTGCTAATGCTATCGGAAATTACGTTCCACCTGCactaattatcccaaggaaaaacTACAAGGCCGAATACTTTAACGGTATTCCACCAGGCAGTTTAGAGTTGTGCCACCCTTCCGGATATATGACTGGTGACTTATTTTTTAAGTGGATGCGCCATTTTGTTGCTTTTGTGAATGCTTCTTTAGCAAATAAGGTATTGCTAATTCTTGACGGTCATTCCAGTCACAAAAACCTGGATGCGCTTGAATTTGCTAAGGCCAACGGTGTGGTAATGCTCTGTTTTCCTCCCCATTGCACTCATCGAATGCAACCAACTGATTTATCGTTTTTTGGTCCACTTCAGGCGTATTATGACCGCGAGATGTCAACATGGATGAAGAACCACCCTGGCAGAACTATAGGCCTATATCAAGTTGCTCAACTTTTTGGAAGAGCCTACGAAATTGCAGCCTCTGTCAGAAATATAACCAGTGGTTTTGAGAAATCTGGAATTTATCCCTTTAATCCACACATTTTTCCAGAAGACCTGTATTTACCTAGTGCAGTTACTGAAAATGAACTGACTAACGAAGATGAGCCAGTTGCAAGTAGTTCATCTCAACCCCGAGTAAACCATGAAGAGTGCGATTCCTCAGAATCTACTGACATTGACGAACAAATGGCGGTCGCAACTGCTAATTCATATGagcaaattaattttgaaagatGTGACACTTCTAAAAACGTTGAAAGTGGTCACTCATCCCCAACAATTTTGTCACAGAATGACGCtacgtatttattaatattcggAGAACAAAGTCAGGTAGGCGAGGTAGGTTGTCAAGAGCAAACAAGCTACGAAGCTATTGGGCTGGAACCAATAGGCATCGAAGATATTCCAGAAACAATCTGTGGAGGGGATAAAACTGGACATCTACTTTTGCACACTGAAAAATCCACCACAAAGTGCATACTTAAAGAAATATCACCACTACCAAAAGCTGCTTCAACAGGAAAGACAAGAGGTAACAAAAAAGTCAGTGGAGCGCAAGTTTTCACAGCTAGTCCATTTATGAGTGATATAAAAGCAGCAGTacagaagaaaaaagaaaaggaaaatcGTCAAtctcttaaaaaacaaaaacaaacgaaGCGTGTTATTTTTGATAATGAGAATGTGGAACCCCAACCTGCACCTAAAAAATCTAGACCCACGCGAGGTCAAAAGCTGACGAAGTCAGCTCAGGATGATGACGAGGACTTAGAGGATCCTTACACTAATGAGGACGAGGAAAACGATGATCCAGCTTGCATTTACTGCAATGAGTTATTTAGCCAATCTAGGCCAAAAGAACATTGGGTGAAGTGTCAACTTTGCTCTAATTGGTGTCATACACTATGCGCAGGCATACctgctaaaaagaaaaattttatcTGTGAACTTTgctcttaa
- Protein Sequence
- MPGNYKRKSTRKSWSQEDMNEAIKAVKDNKMGWLLASKHFNVPQATLRRHYYRTPVNLGRFKPTFNAEMEKMLVDHMLEFESRLFGFNTTEIRKLAFEFAEKLGLDHRFDKNKKIAGWDWLKGFRERNPNISLRAPEPTSAARARAFNKPQVMKFFSLLEKTVTDNGIKAHRIYNMDESGLNTVQKPPKVFASKGKKQVGAVTSAERGEHFTVVACANAIGNYVPPALIIPRKNYKAEYFNGIPPGSLELCHPSGYMTGDLFFKWMRHFVAFVNASLANKVLLILDGHSSHKNLDALEFAKANGVVMLCFPPHCTHRMQPTDLSFFGPLQAYYDREMSTWMKNHPGRTIGLYQVAQLFGRAYEIAASVRNITSGFEKSGIYPFNPHIFPEDLYLPSAVTENELTNEDEPVASSSSQPRVNHEECDSSESTDIDEQMAVATANSYEQINFERCDTSKNVESGHSSPTILSQNDATYLLIFGEQSQVGEVGCQEQTSYEAIGLEPIGIEDIPETICGGDKTGHLLLHTEKSTTKCILKEISPLPKAASTGKTRGNKKVSGAQVFTASPFMSDIKAAVQKKKEKENRQSLKKQKQTKRVIFDNENVEPQPAPKKSRPTRGQKLTKSAQDDDEDLEDPYTNEDEENDDPACIYCNELFSQSRPKEHWVKCQLCSNWCHTLCAGIPAKKKNFICELCS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00951763; iTF_00951764; iTF_00745618; iTF_00745616; iTF_00745619; iTF_00850652; iTF_00850653; iTF_00850654; iTF_01525921; iTF_01525922; iTF_01525923; iTF_01525929; iTF_00745615;
- 90% Identity
- iTF_00951763; iTF_00951764;
- 80% Identity
- iTF_00951763;