Gspa013809.1
Basic Information
- Insect
- Globia sparganii
- Gene Symbol
- -
- Assembly
- GCA_949316385.1
- Location
- OX438661.1:20149792-20151996[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-08 8.4e-06 26.5 0.0 2 40 16 54 15 60 0.89
Sequence Information
- Coding Sequence
- ATGCCTGGCAATTATAAACGAAAATCGACGCGGAAGAGTTGGTCACAAGAAGACATGAATGAGGCCATTAAAGCAGTAAAGGAGAATAAGATGGGTTGGCTTTTAGCATCGAAACATTTTAATGTACCACAAGCAACTCTTCGTCGCCATTATTATAGAACTCCAGTAAATCTTGGTCGTTTTAAACCAACTTTTAACGCAGATATGGAAAAAACGCTGGTAGATCACATGCTCGAGTTCGAAAGTCGACTTTTTGGATTTAATACAACCGAAATAAGAAAATTAGCTTTTGAATTTGCGGAAAAATTGGGACTGGATCACAGATTtgataagaataaaaaaatagctgGCTGGGATTGGCTGAAAGGTTTTAGAGAACGTAATCCTAATATCTCTCTCAGAGCTCCAGAGCCAACGTCAGCTGCAAGAGCAAGGGCATTCAATAAACCTcaagtaatgatttttttttcccttttgGAAAAAGCAGTGACTGATAATGAGATTCAAGCACATAGAATTTACAATATGGACGAGTCTGGACTCAACACTGTTCAAAAGCCACCAAAAGTGTTTGCATCCAAAGGGAAAAAACAAGTCGGTGCTGTTACTAGTGCTGAACGTGGTGAACATTTCACAGTTGTTGCCTGTGCTAATGCTATCGGAAATTACGTTCCACCAGCACTAATTATCCCCAGGAAAAACTACAAGGCCGAATACTTTGACGGTACTCCACCAGGCAGTTTAGAGCTGTGCCACCCCTCTGGGTACATGACCggtgatttattttttaagtggatGCGCCATTTTGTTGCTTTTGTGAATGCTTCTTTAGCAAACAAGGTTTTGCTAATTCTTGACGGTCATTCCAGTCACAAAAATCTGGATGCACTTGAATTTGCTAAGGCCAACGGCGTGATAATGCTCTGTTTTCCTCCCCATTGCACTCATCGAATGCAACCAACTGATTTATCATTTTTTGGTCCACTTCAGGCATATTATGACCGCGAGATGTCAACCTGGATGAAGAACCATCCTGGCAGAACCATAGGCCTGTACCAAGTTGCTCAACTTTTTGGAAGAGCCTATGAAATTGCAGCCTCTGTTAGAAATATAACGAGTGGTTTTGAGAAATCTGGAATTTATCCCTTTAACCCACACATTTTTCCAGAAGACCTGTATTTACCTAGCGCAGTTACCGAAAATGAATTGATTAACGACGAAGAGCCGGTGGCAAGTAGTTCATCACAACcccaagtaaattatgaagagtGCGATTCCTCAGAATCTACTGATATTGACGAACAATTAATGGCGGTAGCAACTGCTAACTCATACGagcaaataaattttgaaacaTGTGACACTTCCAGAGACGTTGAAAGTCGTCACTCATCCCCAACAATTTTGGTACCAAATGTTGCTACGCATTTATTAATATACGGAGAGCAAAGTCAGGTAGGCGATAAAGTTGTTGAACAAGAACTGTTAGATAATGAAGCTGTTGAACAAGGACAGATAGAAAATGAAGTTCAAATAGACGACGAAGTTGTTGGTCAAGAGCAGAGAGGTGACGATGCTGTTGGGCAAGAACAGATAGGCATCGAAGCTGTTCCAGAAAAAATCTGTGAAGAGGATAAAGAACAAATGTCGGGTAGCAATCAAATTTTAACTGGACATCCACTTTCGCAAACTGAAATATTATTCACAACAAAGTGCATACTTAAAGAAATTTCACCACTACCAAAAGCTGCTTCAACAGGAAAATCCAGGGCTAACAGAAAAGTCGGTGGAGCGCAGGTTTTCACAGCTAGTCCATTTATGAGTGATATAAAAGCAGCAGTacagaagaaaaaagaaaaggaaaatcGCCAATCtcttaaaaaacaaaagcaaacgAAGCGTGTTATTTTTGACAATGAGAATGTGGAACCCCAGCCTGCACCTAAAAAATCTACATCCACACGAGTTCAAAAGCAGACGAAGCCAGTTCAGGATGATGACGAGGACCTCGAGGATCCTTACGCTAATGAGGACGAGGAAAACGATGATCCAGCTTGCATTTATTGCAATGAGCTATTTAGCCAATCTAGGCCAAAAGAACATTGGGTGAAGTGTCAACTTTGCTCTAATTGGTGTCATACACTATGCGCAGGCATACctgcaaaaaagaaaagttttaTCTGCGAACTTTGCCctcaaaattaa
- Protein Sequence
- MPGNYKRKSTRKSWSQEDMNEAIKAVKENKMGWLLASKHFNVPQATLRRHYYRTPVNLGRFKPTFNADMEKTLVDHMLEFESRLFGFNTTEIRKLAFEFAEKLGLDHRFDKNKKIAGWDWLKGFRERNPNISLRAPEPTSAARARAFNKPQVMIFFSLLEKAVTDNEIQAHRIYNMDESGLNTVQKPPKVFASKGKKQVGAVTSAERGEHFTVVACANAIGNYVPPALIIPRKNYKAEYFDGTPPGSLELCHPSGYMTGDLFFKWMRHFVAFVNASLANKVLLILDGHSSHKNLDALEFAKANGVIMLCFPPHCTHRMQPTDLSFFGPLQAYYDREMSTWMKNHPGRTIGLYQVAQLFGRAYEIAASVRNITSGFEKSGIYPFNPHIFPEDLYLPSAVTENELINDEEPVASSSSQPQVNYEECDSSESTDIDEQLMAVATANSYEQINFETCDTSRDVESRHSSPTILVPNVATHLLIYGEQSQVGDKVVEQELLDNEAVEQGQIENEVQIDDEVVGQEQRGDDAVGQEQIGIEAVPEKICEEDKEQMSGSNQILTGHPLSQTEILFTTKCILKEISPLPKAASTGKSRANRKVGGAQVFTASPFMSDIKAAVQKKKEKENRQSLKKQKQTKRVIFDNENVEPQPAPKKSTSTRVQKQTKPVQDDDEDLEDPYANEDEENDDPACIYCNELFSQSRPKEHWVKCQLCSNWCHTLCAGIPAKKKSFICELCPQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00951762;
- 90% Identity
- iTF_00745615;
- 80% Identity
- -