Mgen037618.1
Basic Information
- Insect
- Malaya genurostris
- Gene Symbol
- -
- Assembly
- GCA_030247185.2
- Location
- CM058073.1:280142191-280143846[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.1 2.2e+04 -3.1 0.0 26 44 158 176 154 179 0.73 2 10 0.38 4e+03 -0.8 0.1 12 45 202 235 195 242 0.74 3 10 0.00043 4.6 8.7 0.0 22 51 240 269 233 270 0.81 4 10 0.00064 6.8 8.1 0.0 22 44 268 290 263 293 0.88 5 10 0.0026 28 6.2 0.3 21 44 295 318 291 323 0.89 6 10 0.0095 1e+02 4.3 0.1 23 52 350 379 340 381 0.92 7 10 5.6e-05 0.6 11.5 0.1 23 52 378 407 374 408 0.88 8 10 0.00049 5.2 8.5 0.0 21 45 432 456 425 463 0.86 9 10 0.00021 2.2 9.7 0.1 21 52 460 491 456 492 0.88 10 10 0.0014 15 7.0 0.4 20 46 487 513 484 519 0.86
Sequence Information
- Coding Sequence
- ATGTTGGGTAAATATGTTGAGCCTCTGGAAAATGACCGAAATCGCAACCAACCGATATCGATGGTGCCGCCGCCACTTTATCCGGCCCCACCAGTGACTTCAATGGCAAATCGGCGTGCAAACGAAAATCCAGTAGCTGCTGTCGTCAATTCACATACAGCCATTCCTGGCAAAAGTGTTTCCACGGCACCGTCATCAACCGTAGTGAGCACTACATTAGAATCCAGTGTTAAGCAACTTACCCCGCAATACCAGTGCCAGCTATGTCTCAAATGTTTCGAAAATGTGTCCAGTTTGTCGTTGCATTTGAGTTCACACGAACAGGACTATCGGAACGCACCGGGATACAATGGGCAAATTACTCCAGCGCATACCATTAAAACGGAACCCCAATCTTTCCATCTAGTGGCACCTCCGAACTATCCCAGCACCATGTTACAGAGTTTTCAGATTGTCGCTAGCTCCGGTCAAACGTGTCAGACTTGTCAGAAAGTTTTTAGTTCCAACGAGCAGTTTCATGCACATATGAAAATCCACGAAAACGAATCCCGCTATCGGGCGTGGTATCAGTCTAATGCGGCAGGTGCGACACAAGCACAACCAACGAAGGAACCGGAACCAGAGGAAAACGACGGAAAACCGATTGACTGTATTGTGTGCCATAGTAAATTCCAGACTGCCGCCCTTTTAGCCGTTCATCTGCGCGAGCATAGCACCCAAAAGCCGTATGCGTGCACAATTTGTGGAAAAGGTTTCATTCAATCCAATAATCTTTCCACACATATGAAAGTTCATTCTGGACAAAAACCTTTCAAATGCGATATTTGCAATAAAAACTTCAGTCAATCCAACAACTTAAAGACACACGTACGGACGCACACCAATGAACGGCCATACGCATGTGCCATCTGCGAGAAACGGtttaatcagaaaaacaacctgACCACTCATATGCGAACTCACTCACTTATCTGTAAAGTCTGCCGGGTTCAGTTTCAGCACCCAATGGAACTGTCCAATCACGTACGGATTTGCTACGCAGATCTTAAGCCGAACATATGCACCGTCTGTAACAAAGTGTTTCTCAACAATGACGAACTGACCGAACATATGAAGCTGCACAATCAGGTTAAACCACACAAGTGTCAAATCTGCTTGAAGACGTTTACCCAGTCCAACAATCTGAAGACCCACATGAAAACTCATATCTTCCAAGATCCTTTCAAATGCACGTTTTGCTCACGTTCCTTCCAAAACGAGGAGGAGTTCACGCGTCACTCACTGGTGCATTCGTCGCCGAAACCGTTTAATTGCCCCTACTGTGGGAAACAATTCATACAGTCGAACAATCTGAAAACCCACGTGCGTACGCACACCGGCGAGAAACCGTACAAATGCTACATATGCGATCGATTGTTTAATCAAAAAAATAATCTTAACACGCACTTGCGTATCCACCAAGGACTCAAGCCCTATCAGTGTACAGTTTGCGAAAAACGATTCAATCAAAGCAACAACTTGAATAAGCACATTTATAAGGTTCACTGTCACGAGAAGATGGGACAGCACATCGGTCCGGCTCCATCCGCTACGGCCACCGCAGTTGCAGCAGGAGCAACAGACGTCCCACTGGATGGTGTTGGAGCGACCAGCTGA
- Protein Sequence
- MLGKYVEPLENDRNRNQPISMVPPPLYPAPPVTSMANRRANENPVAAVVNSHTAIPGKSVSTAPSSTVVSTTLESSVKQLTPQYQCQLCLKCFENVSSLSLHLSSHEQDYRNAPGYNGQITPAHTIKTEPQSFHLVAPPNYPSTMLQSFQIVASSGQTCQTCQKVFSSNEQFHAHMKIHENESRYRAWYQSNAAGATQAQPTKEPEPEENDGKPIDCIVCHSKFQTAALLAVHLREHSTQKPYACTICGKGFIQSNNLSTHMKVHSGQKPFKCDICNKNFSQSNNLKTHVRTHTNERPYACAICEKRFNQKNNLTTHMRTHSLICKVCRVQFQHPMELSNHVRICYADLKPNICTVCNKVFLNNDELTEHMKLHNQVKPHKCQICLKTFTQSNNLKTHMKTHIFQDPFKCTFCSRSFQNEEEFTRHSLVHSSPKPFNCPYCGKQFIQSNNLKTHVRTHTGEKPYKCYICDRLFNQKNNLNTHLRIHQGLKPYQCTVCEKRFNQSNNLNKHIYKVHCHEKMGQHIGPAPSATATAVAAGATDVPLDGVGATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01462266;
- 90% Identity
- iTF_00949010;
- 80% Identity
- iTF_00949010;