Msep180004.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068372.1:42807839-42808930[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0053 2.5e+02 5.9 0.0 27 46 4 23 2 29 0.89 2 13 0.019 8.6e+02 4.2 0.0 27 46 32 51 25 58 0.88 3 13 0.61 2.8e+04 -0.7 0.0 27 45 60 78 54 85 0.86 4 13 0.016 7.3e+02 4.4 0.0 26 46 87 107 74 114 0.87 5 13 0.43 2e+04 -0.2 0.0 26 46 115 135 112 142 0.87 6 13 0.0076 3.5e+02 5.4 0.0 27 46 144 163 139 169 0.89 7 13 0.31 1.4e+04 0.3 0.0 27 46 172 191 167 198 0.88 8 13 0.3 1.4e+04 0.3 0.0 27 46 200 219 193 227 0.88 9 13 0.33 1.5e+04 0.2 0.0 27 46 228 247 224 253 0.88 10 13 0.011 5e+02 4.9 0.0 27 45 256 274 249 280 0.89 11 13 0.87 4e+04 -1.1 0.0 27 46 284 303 282 309 0.87 12 13 0.18 8.5e+03 1.0 0.0 27 46 312 331 306 338 0.88 13 13 0.0013 58 7.9 0.2 27 45 340 358 333 361 0.89
Sequence Information
- Coding Sequence
- ATGTATGAGTGTGATGTGTGTCTGAAAACCTTCACCCAGTCACCTAATTTGTCACGGCATAAACAAATCCACAGTGGAATTAAAAAGTATGAGTGTGATGTGTGTCTTAAAACCTTCACGCAGTCATCTAATTTGTCGCAGCATAAACAAATCCACAGTGGAATTAAAAAGTATGAGTGTGATGTGTGTCTAAAAACCTTCAACCTGTCATATAATTTGTCACAACATGAACAAATCCACAGTGGAATTAAAAAGTACGAGTGTGATGTGTGTCTTAAAACCTTCACCCAGTCATCTAATTTGTCACAGCATAAACAAATCCACAGTGGAATTAAAAAGTATAAGTGCGATATATGTCAGAAAACATTTACCCGGTCATCTGATTTGTCAGGACATATGCAAATCCACAGTGGAATTAAAAAGTATGAGTGTAATGTGTGTCATAAAACCTTCACCCAGTCATCTAATTTGTCTGGACATATGCAAATCCACAGCGGAATTAAAAAGTATGAGTGTGATGTGTGTCATAAAACCTTCACCCGGTCATCTAGTTTGTCACAACATATGCAAATCCACAGTGGAATTAAAAAGTACGAGTGTGATGTGTGTCATAAAACCTTCACCCGGTCATCTAGTTTGTCACAACATATGCAAATCCACAGTGGAATTAAAAAGTACGAGTGTGATGTGTGTCATAAAACCTTCACCCGGTCATCTAGTTTGTCACAACATATGCAAATCCACAGTGGAATTAAAAAGTACGAGTGTGATGTGTGTCATAAAACCTTCACCCAGTCATCTAATTTGTCACAACATAAACAAATCCACAGTGGAATTAAATTGTATAAGTGTGATCTGTGTCAGAAAACATTTATCCAGTCATCTGCTTTGGCTGGACATATGCAAATCCACAGTGGAATTAAAAAGTATGAGTGCAGTGTATGTCAGAAAACATTTACCCGGTCATCTGATTTGTCAAGACATAAACAAATCCACAGTGGAATTAAAAAGTACGAGTGTCATGTGTGTCATAAAACCTTCACCCAGTCGCATAATTTGTCACGGCATAAACAAATCCACAATGGAATTTAA
- Protein Sequence
- MYECDVCLKTFTQSPNLSRHKQIHSGIKKYECDVCLKTFTQSSNLSQHKQIHSGIKKYECDVCLKTFNLSYNLSQHEQIHSGIKKYECDVCLKTFTQSSNLSQHKQIHSGIKKYKCDICQKTFTRSSDLSGHMQIHSGIKKYECNVCHKTFTQSSNLSGHMQIHSGIKKYECDVCHKTFTRSSSLSQHMQIHSGIKKYECDVCHKTFTRSSSLSQHMQIHSGIKKYECDVCHKTFTRSSSLSQHMQIHSGIKKYECDVCHKTFTQSSNLSQHKQIHSGIKLYKCDLCQKTFIQSSALAGHMQIHSGIKKYECSVCQKTFTRSSDLSRHKQIHSGIKKYECHVCHKTFTQSHNLSRHKQIHNGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00946770; iTF_00947327;
- 90% Identity
- iTF_00946770; iTF_00947327;
- 80% Identity
- iTF_00946770; iTF_00947327;