Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4.2 2.1e+03 2.8 0.1 17 38 2 20 1 25 0.86

2 12 0.27 1.3e+02 6.7 0.3 15 38 28 48 21 53 0.91

3 12 0.25 1.3e+02 6.8 0.6 15 38 84 104 72 109 0.87

4 12 0.017 8.5 10.5 0.5 15 39 112 133 105 137 0.83

5 12 0.0027 1.3 13.1 2.7 15 40 140 162 132 165 0.85

6 12 0.0053 2.7 12.1 2.1 15 40 168 190 160 193 0.85

7 12 0.0026 1.3 13.1 1.8 6 40 188 218 187 221 0.81

8 12 0.0053 2.6 12.1 2.1 15 40 224 246 216 249 0.85

9 12 0.014 6.8 10.8 1.6 6 38 244 272 243 274 0.82

10 12 8.8 4.4e+03 1.8 0.2 18 36 283 298 280 305 0.74

11 12 0.12 58 7.8 1.1 15 38 308 328 300 333 0.83

12 12 0.4 2e+02 6.1 6.2 15 38 336 356 327 358 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4.2	2.1e+03	2.8	0.1	17	38	2	20	1	25	0.86
2	12	0.27	1.3e+02	6.7	0.3	15	38	28	48	21	53	0.91
3	12	0.25	1.3e+02	6.8	0.6	15	38	84	104	72	109	0.87
4	12	0.017	8.5	10.5	0.5	15	39	112	133	105	137	0.83
5	12	0.0027	1.3	13.1	2.7	15	40	140	162	132	165	0.85
6	12	0.0053	2.7	12.1	2.1	15	40	168	190	160	193	0.85
7	12	0.0026	1.3	13.1	1.8	6	40	188	218	187	221	0.81
8	12	0.0053	2.6	12.1	2.1	15	40	224	246	216	249	0.85
9	12	0.014	6.8	10.8	1.6	6	38	244	272	243	274	0.82
10	12	8.8	4.4e+03	1.8	0.2	18	36	283	298	280	305	0.74
11	12	0.12	58	7.8	1.1	15	38	308	328	300	333	0.83
12	12	0.4	2e+02	6.1	6.2	15	38	336	356	327	358	0.86

Coding Sequence: ATGTATGAGTGTGATGTGTGTCTGAAAACCTTCACCCAGTCACCTAATTTGTCACGGCATAAACAAATCCACAGTGGAATTAAAAAGTATGAGTGTGATGTGTGTCTTAAAACCTTCACGCAGTCATCTAATTTGTCGCAGCATAAACAAATCCACAGTGGAATTAAAAAGTATGAGTGTGATGTGTGTCTAAAAACCTTCAACCTGTCATATAATTTGTCACAACATGAACAAATCCACAGTGGAATTAAAAAGTACGAGTGTGATGTGTGTCTTAAAACCTTCACCCAGTCATCTAATTTGTCACAGCATAAACAAATCCACAGTGGAATTAAAAAGTATAAGTGCGATATATGTCAGAAAACATTTACCCGGTCATCTGATTTGTCAGGACATATGCAAATCCACAGTGGAATTAAAAAGTATGAGTGTAATGTGTGTCATAAAACCTTCACCCAGTCATCTAATTTGTCTGGACATATGCAAATCCACAGCGGAATTAAAAAGTATGAGTGTGATGTGTGTCATAAAACCTTCACCCGGTCATCTAGTTTGTCACAACATATGCAAATCCACAGTGGAATTAAAAAGTACGAGTGTGATGTGTGTCATAAAACCTTCACCCGGTCATCTAGTTTGTCACAACATATGCAAATCCACAGTGGAATTAAAAAGTACGAGTGTGATGTGTGTCATAAAACCTTCACCCGGTCATCTAGTTTGTCACAACATATGCAAATCCACAGTGGAATTAAAAAGTACGAGTGTGATGTGTGTCATAAAACCTTCACCCAGTCATCTAATTTGTCACAACATAAACAAATCCACAGTGGAATTAAATTGTATAAGTGTGATCTGTGTCAGAAAACATTTATCCAGTCATCTGCTTTGGCTGGACATATGCAAATCCACAGTGGAATTAAAAAGTATGAGTGCAGTGTATGTCAGAAAACATTTACCCGGTCATCTGATTTGTCAAGACATAAACAAATCCACAGTGGAATTAAAAAGTACGAGTGTCATGTGTGTCATAAAACCTTCACCCAGTCGCATAATTTGTCACGGCATAAACAAATCCACAATGGAATTTAA
Protein Sequence: MYECDVCLKTFTQSPNLSRHKQIHSGIKKYECDVCLKTFTQSSNLSQHKQIHSGIKKYECDVCLKTFNLSYNLSQHEQIHSGIKKYECDVCLKTFTQSSNLSQHKQIHSGIKKYKCDICQKTFTRSSDLSGHMQIHSGIKKYECNVCHKTFTQSSNLSGHMQIHSGIKKYECDVCHKTFTRSSSLSQHMQIHSGIKKYECDVCHKTFTRSSSLSQHMQIHSGIKKYECDVCHKTFTRSSSLSQHMQIHSGIKKYECDVCHKTFTQSSNLSQHKQIHSGIKLYKCDLCQKTFIQSSALAGHMQIHSGIKKYECSVCQKTFTRSSDLSRHKQIHSGIKKYECHVCHKTFTQSHNLSRHKQIHNGI

Sequence clustering based on sequence similarity using MMseqs2