Msep172841.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068371.1:374987311-374989115[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.5e-10 7.2e-08 36.0 0.0 5 39 7 41 6 44 0.90
Sequence Information
- Coding Sequence
- ATGTGGTTGGCAGTTTCCATGCAAGAAGCTGTTCAAGCAGTAATAAATGGCTCAATGGGATACAAAAAGGCAGCTCATCAGTTCAAAGTGCCACAAACAACTTTAGAGCACCATGTTAAGAAAAAAAGAGATGATCCAGAGCATTCTGTGAAGAAATCTATGGGACATTTCACTTGTGTTTTTAATGAAGCACAAGAATCCGAGCTTGTGGATTATTTAACTAAAATGGAGGCTCAACTCTTTGGTCTTACTATCAATGAACTTAGTGACCTTGCTTTCCAGCTAGCAGAGCGAAATAAATTGAATCATCCATTTGGTGAGAATGGAAAAGCTGGTGTAGACTGGGCAAGAGGATTTTTAACTCACCACCCTAATTTAAGCATAAGAAGACCTGAGGCTACGTCTGCAGCTCGTGCGATGGGCTTCAATAAGGTTGCTGTAAAACAGTTCTTCAGCCATCTATCCTACGTAGTTGATACTTACCAGCTTACACCAGACAGgatttataactgtgatgaaacaggtCTAACTGTAAACCCTAAAGGGCATTCGAAGATAATAGCAAAAAGAGGCCGTAGACAGGTTGGCACAGTCACATCAGCCGAGAGGGGTCAAACTGTTACAGCTGAAATACGCTTTTCAGCTGCTGGAACCTACATCGCTCCAATGCTAATTTTTCCTAGAAAACGGATGCAGCAGGAATTTGAGACCGGACTTCCCCCAAGTGCGACTTCACAGGTCCATGAAACAGGATGGATGACCAAAGaactttttttagtttggtttgaaaagttcatatcttttacaggagcaaaaaaagagaaaccaatgctactactcttggatgggcattcaacacacacgaaaagtttagcactaattgatatggctcgtgcaaatggagtgattctcttgtgtttccctccccactgttcccatagactccaaccccTTGACGTTGGATTTATGAAGCCCTTAAGTAAATACTATGAGGAGGAAGTCCGTAAATGGCTTAGATGCAATCCAGGAAAAGTGGTGACATTATTCCAGATCGCTTCTCTGTTTGGTACCGCCTATGTTCAAgcatcaacaatgatgacagctgtgaacgggttccggaaaacaggcatatggcctgttgatatgaatgtttttaatgatgcagattttttaccttcggtaactacagacatccagctccctactgacattgctaatgaggctacagttttaaatatacaggcagacctgacctcaccatctctgagtagtcctgaaaaacttaatatgccgagctgtagtaggcctaatttcaaatgtgccaccctggaaaacattttacccataccaaaaatttctcaggaaaataaacgtgtttcaaaaaatcgtggtaaaagtactatcttaacatcatcaccatataaaaataagctacagagtgctgaaaaaaataaaagtggggtcaagaaaccagtgaaaagacgtcttttactttctaaaaaagctctgaaaaaatatccagataaacagagaaacatatcacctgaaaatgaaaaaactataaccTTAACAAACCAACTGTTTTCATGTGTTTCTTGCCTAAAATGGGCTCACAACTCTTGCACAGGAATCGAAAGTGAAGACGAGGATGTCACACACATTTGTGCTCTTTGTGAAACATGA
- Protein Sequence
- MWLAVSMQEAVQAVINGSMGYKKAAHQFKVPQTTLEHHVKKKRDDPEHSVKKSMGHFTCVFNEAQESELVDYLTKMEAQLFGLTINELSDLAFQLAERNKLNHPFGENGKAGVDWARGFLTHHPNLSIRRPEATSAARAMGFNKVAVKQFFSHLSYVVDTYQLTPDRIYNCDETGLTVNPKGHSKIIAKRGRRQVGTVTSAERGQTVTAEIRFSAAGTYIAPMLIFPRKRMQQEFETGLPPSATSQVHETGWMTKELFLVWFEKFISFTGAKKEKPMLLLLDGHSTHTKSLALIDMARANGVILLCFPPHCSHRLQPLDVGFMKPLSKYYEEEVRKWLRCNPGKVVTLFQIASLFGTAYVQASTMMTAVNGFRKTGIWPVDMNVFNDADFLPSVTTDIQLPTDIANEATVLNIQADLTSPSLSSPEKLNMPSCSRPNFKCATLENILPIPKISQENKRVSKNRGKSTILTSSPYKNKLQSAEKNKSGVKKPVKRRLLLSKKALKKYPDKQRNISPENEKTITLTNQLFSCVSCLKWAHNSCTGIESEDEDVTHICALCET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00944080;
- 90% Identity
- iTF_00943990;
- 80% Identity
- -