Meup033312.1
Basic Information
- Insect
- Macrosiphum euphorbiae
- Gene Symbol
- -
- Assembly
- GCA_949089665.1
- Location
- CARXXK010000003.1:58410858-58414323[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.067 1.7e+02 4.3 0.0 20 51 137 168 131 171 0.85 2 8 0.36 9.1e+02 2.0 0.0 21 52 166 197 154 198 0.87 3 8 0.047 1.2e+02 4.8 0.0 21 45 194 218 186 224 0.89 4 8 0.011 27 6.9 0.1 21 44 296 319 270 327 0.93 5 8 0.13 3.3e+02 3.4 0.0 21 45 425 449 422 456 0.86 6 8 0.37 9.5e+02 1.9 0.0 22 46 454 478 450 483 0.88 7 8 0.072 1.8e+02 4.2 0.0 21 48 554 581 551 586 0.85 8 8 0.11 2.7e+02 3.7 0.1 22 44 583 605 579 610 0.89
Sequence Information
- Coding Sequence
- ATGTCTAGACAAATTTCATCTATCAAATGTGagcaacaaaatatatacattaaacaagaacataatattgatgAATCAACTGAATATAATGATAGTAACGATGGTGAATTTACTTATCAATGttacaGGTTGGTGCAAGATTCTAAATATACTACAGAAAATGTCGAAGCACAAATAAAAACGGAAGTGAATATAATTGACAGTGTTAAATATGAAAGTTCTTTTAAGAGAGAGAATTACAATTATGATCCATCAATCATTATGTGCCAAATGCCTACAACATATTGCATAAAAATCGAGCCTACAAATTGCAATCTGAATACTAAAGCCTCAACCATAAATTTAACACCTCCTAAACACAAGACggcattatataaaaaaaaacaatacttttCTCAAATTGGAATCAAATCTGAAAAACCATATAAATGTGGTAtttgtaataaatcattttcactGAAAGGAACCTTAAAAACTCACCTTTCAATTCATATGAAAGATAAACCTTACAAATGTTTCATTTGCAACAAATCTTTTTCTCAGGCATCAACTTTAATTACTCACAAAGTAACTCATAATTTTGAGAAACCATTTAATTGTGATATTTGCAAAAAGTCATTCGCACAGAAAGTAAATATGAAAACTCACATGATGTTTCATATGGGtgataaatctaataaaaaaacttgtaataaaacaattatttcactAAATGAATTTTATACGAAAACTCTTACTGATGAAAAGCCCTACAAATCTGtcatctataataaattattgtctgAAGGAACAACTTTAAGTgttaaacaacaatttaaatgccatatttgttgtaaatcattttattataaaggaaGCTTGAAAACTCACTTAATAACTCATATGAAAGAAAAACCATATAAATGCCATATTTGTAGTAAAACATATTCACAGAAAGGAAACTTGAAAACTCACTTAATAACTCATATGAAAGAAGAACCatataaatgcaatatttatagtaaatcaTATTCACAGAAAGGATACATGAAAACTCACATGATGTTTCATATGGGTGAAAAATCTAATAACAAAACttgtaataaaacaatttcacTAAAAGAATTTTATACGAAAACTCTTACTGATGAAAATCCATACAAATCTGTCAtctgtaataaattattgtctgAAGAAACAACTTTAAGTgttaaacaacaatttaaatgcCATGTTTGTAGTAAATCATTTCCATATAAAGCAACCCTGAAAACTCACTTAATAATTCATACTGAAGAAAAACCACATAAATGCCATATTTGtagtaaatcattttattataaaggaaACTTGAAAACTCACTTAATAACTCATATGAAAGAAAAACCATATAAATGCCATATTTGTAGTAAATCATATTCACAGAAAGGATACATGAAAATTCACATGGAGTTTCATATGGGAGAAAAATCTAATAACAAAACTTGTAATGAAACAATTTTACTAAAAGAATTTCATACGAAAACTCTTACTGATGAAAATCCATACAAATCTGTCAtctgtaataaattattgtctgAAGAAACAACTTTAAGTgttaaacaacaatttaaatgcCATGTTTGTAGTAAATCATTTCCATATAAAGCAACCCTGAAAACTCACTTAATAATTCATACTGAAGAAAAACCACATAAATGCCATATTTGtagtaaatcattttattataaaggaaACTTGAAAACTCACTTAATAATTCATATGAAAGAAAAACCATATAAATGCCATATTTGTAGTAAATCATATTCACAGAAAGGAAACTTGAAAATTCACACAAGAATTCATACAAGAGAAAACCCATAA
- Protein Sequence
- MSRQISSIKCEQQNIYIKQEHNIDESTEYNDSNDGEFTYQCYRLVQDSKYTTENVEAQIKTEVNIIDSVKYESSFKRENYNYDPSIIMCQMPTTYCIKIEPTNCNLNTKASTINLTPPKHKTALYKKKQYFSQIGIKSEKPYKCGICNKSFSLKGTLKTHLSIHMKDKPYKCFICNKSFSQASTLITHKVTHNFEKPFNCDICKKSFAQKVNMKTHMMFHMGDKSNKKTCNKTIISLNEFYTKTLTDEKPYKSVIYNKLLSEGTTLSVKQQFKCHICCKSFYYKGSLKTHLITHMKEKPYKCHICSKTYSQKGNLKTHLITHMKEEPYKCNIYSKSYSQKGYMKTHMMFHMGEKSNNKTCNKTISLKEFYTKTLTDENPYKSVICNKLLSEETTLSVKQQFKCHVCSKSFPYKATLKTHLIIHTEEKPHKCHICSKSFYYKGNLKTHLITHMKEKPYKCHICSKSYSQKGYMKIHMEFHMGEKSNNKTCNETILLKEFHTKTLTDENPYKSVICNKLLSEETTLSVKQQFKCHVCSKSFPYKATLKTHLIIHTEEKPHKCHICSKSFYYKGNLKTHLIIHMKEKPYKCHICSKSYSQKGNLKIHTRIHTRENP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00942060;
- 90% Identity
- iTF_00942060;
- 80% Identity
- iTF_00942060;