Basic Information

Insect: Macrosiphum euphorbiae
Gene Symbol: -
Assembly: GCA_949089665.1
Location: CARXXK010000003.1:58410858-58414323[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.7e-06 0.00049 22.3 0.9 1 23 142 164 142 164 0.98

2 12 2.3e-06 0.0003 23.0 1.5 1 23 170 192 170 192 0.98

3 12 7e-06 0.00091 21.4 1.8 1 23 198 220 198 220 0.97

4 12 0.0023 0.3 13.5 7.1 1 23 272 294 272 294 0.99

5 12 5.2e-07 6.8e-05 25.0 3.7 1 23 300 322 300 322 0.99

6 12 0.28 36 7.0 0.9 2 23 329 350 328 350 0.83

7 12 8.7e-06 0.0011 21.1 2.3 1 23 401 423 401 423 0.98

8 12 1.3e-05 0.0017 20.6 6.1 1 23 429 451 429 451 0.98

9 12 4.1e-05 0.0053 19.0 3.8 1 23 457 479 457 479 0.97

10 12 8.7e-06 0.0011 21.1 2.3 1 23 530 552 530 552 0.98

11 12 1.7e-05 0.0022 20.2 5.2 1 23 558 580 558 580 0.97

12 12 3.8e-07 5e-05 25.4 3.4 1 23 586 608 586 608 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.7e-06	0.00049	22.3	0.9	1	23	142	164	142	164	0.98
2	12	2.3e-06	0.0003	23.0	1.5	1	23	170	192	170	192	0.98
3	12	7e-06	0.00091	21.4	1.8	1	23	198	220	198	220	0.97
4	12	0.0023	0.3	13.5	7.1	1	23	272	294	272	294	0.99
5	12	5.2e-07	6.8e-05	25.0	3.7	1	23	300	322	300	322	0.99
6	12	0.28	36	7.0	0.9	2	23	329	350	328	350	0.83
7	12	8.7e-06	0.0011	21.1	2.3	1	23	401	423	401	423	0.98
8	12	1.3e-05	0.0017	20.6	6.1	1	23	429	451	429	451	0.98
9	12	4.1e-05	0.0053	19.0	3.8	1	23	457	479	457	479	0.97
10	12	8.7e-06	0.0011	21.1	2.3	1	23	530	552	530	552	0.98
11	12	1.7e-05	0.0022	20.2	5.2	1	23	558	580	558	580	0.97
12	12	3.8e-07	5e-05	25.4	3.4	1	23	586	608	586	608	0.99

Sequence Information

Coding Sequence: ATGTCTAGACAAATTTCATCTATCAAATGTGagcaacaaaatatatacattaaacaagaacataatattgatgAATCAACTGAATATAATGATAGTAACGATGGTGAATTTACTTATCAATGttacaGGTTGGTGCAAGATTCTAAATATACTACAGAAAATGTCGAAGCACAAATAAAAACGGAAGTGAATATAATTGACAGTGTTAAATATGAAAGTTCTTTTAAGAGAGAGAATTACAATTATGATCCATCAATCATTATGTGCCAAATGCCTACAACATATTGCATAAAAATCGAGCCTACAAATTGCAATCTGAATACTAAAGCCTCAACCATAAATTTAACACCTCCTAAACACAAGACggcattatataaaaaaaaacaatacttttCTCAAATTGGAATCAAATCTGAAAAACCATATAAATGTGGTAtttgtaataaatcattttcactGAAAGGAACCTTAAAAACTCACCTTTCAATTCATATGAAAGATAAACCTTACAAATGTTTCATTTGCAACAAATCTTTTTCTCAGGCATCAACTTTAATTACTCACAAAGTAACTCATAATTTTGAGAAACCATTTAATTGTGATATTTGCAAAAAGTCATTCGCACAGAAAGTAAATATGAAAACTCACATGATGTTTCATATGGGtgataaatctaataaaaaaacttgtaataaaacaattatttcactAAATGAATTTTATACGAAAACTCTTACTGATGAAAAGCCCTACAAATCTGtcatctataataaattattgtctgAAGGAACAACTTTAAGTgttaaacaacaatttaaatgccatatttgttgtaaatcattttattataaaggaaGCTTGAAAACTCACTTAATAACTCATATGAAAGAAAAACCATATAAATGCCATATTTGTAGTAAAACATATTCACAGAAAGGAAACTTGAAAACTCACTTAATAACTCATATGAAAGAAGAACCatataaatgcaatatttatagtaaatcaTATTCACAGAAAGGATACATGAAAACTCACATGATGTTTCATATGGGTGAAAAATCTAATAACAAAACttgtaataaaacaatttcacTAAAAGAATTTTATACGAAAACTCTTACTGATGAAAATCCATACAAATCTGTCAtctgtaataaattattgtctgAAGAAACAACTTTAAGTgttaaacaacaatttaaatgcCATGTTTGTAGTAAATCATTTCCATATAAAGCAACCCTGAAAACTCACTTAATAATTCATACTGAAGAAAAACCACATAAATGCCATATTTGtagtaaatcattttattataaaggaaACTTGAAAACTCACTTAATAACTCATATGAAAGAAAAACCATATAAATGCCATATTTGTAGTAAATCATATTCACAGAAAGGATACATGAAAATTCACATGGAGTTTCATATGGGAGAAAAATCTAATAACAAAACTTGTAATGAAACAATTTTACTAAAAGAATTTCATACGAAAACTCTTACTGATGAAAATCCATACAAATCTGTCAtctgtaataaattattgtctgAAGAAACAACTTTAAGTgttaaacaacaatttaaatgcCATGTTTGTAGTAAATCATTTCCATATAAAGCAACCCTGAAAACTCACTTAATAATTCATACTGAAGAAAAACCACATAAATGCCATATTTGtagtaaatcattttattataaaggaaACTTGAAAACTCACTTAATAATTCATATGAAAGAAAAACCATATAAATGCCATATTTGTAGTAAATCATATTCACAGAAAGGAAACTTGAAAATTCACACAAGAATTCATACAAGAGAAAACCCATAA
Protein Sequence: MSRQISSIKCEQQNIYIKQEHNIDESTEYNDSNDGEFTYQCYRLVQDSKYTTENVEAQIKTEVNIIDSVKYESSFKRENYNYDPSIIMCQMPTTYCIKIEPTNCNLNTKASTINLTPPKHKTALYKKKQYFSQIGIKSEKPYKCGICNKSFSLKGTLKTHLSIHMKDKPYKCFICNKSFSQASTLITHKVTHNFEKPFNCDICKKSFAQKVNMKTHMMFHMGDKSNKKTCNKTIISLNEFYTKTLTDEKPYKSVIYNKLLSEGTTLSVKQQFKCHICCKSFYYKGSLKTHLITHMKEKPYKCHICSKTYSQKGNLKTHLITHMKEEPYKCNIYSKSYSQKGYMKTHMMFHMGEKSNNKTCNKTISLKEFYTKTLTDENPYKSVICNKLLSEETTLSVKQQFKCHVCSKSFPYKATLKTHLIIHTEEKPHKCHICSKSFYYKGNLKTHLITHMKEKPYKCHICSKSYSQKGYMKIHMEFHMGEKSNNKTCNETILLKEFHTKTLTDENPYKSVICNKLLSEETTLSVKQQFKCHVCSKSFPYKATLKTHLIIHTEEKPHKCHICSKSFYYKGNLKTHLIIHMKEKPYKCHICSKSYSQKGNLKIHTRIHTRENP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00942465;
90% Identity: iTF_00942465;
80% Identity: iTF_00942465;