Meup016022.1
Basic Information
- Insect
- Macrosiphum euphorbiae
- Gene Symbol
- -
- Assembly
- GCA_949089665.1
- Location
- CARXXK010000002.1:10856392-10874454[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0078 20 7.3 0.4 4 48 238 282 236 288 0.81 2 16 1.6 4e+03 -0.1 0.0 20 44 282 306 276 311 0.81 3 16 4.6 1.2e+04 -1.5 0.0 22 45 312 335 305 338 0.80 4 16 0.0028 7 8.8 0.0 19 47 337 365 331 371 0.85 5 16 8.3 2.1e+04 -2.4 0.0 24 43 370 389 367 393 0.83 6 16 0.034 87 5.3 0.0 20 45 394 419 388 425 0.87 7 16 0.00062 1.6 10.9 0.0 16 47 446 477 433 484 0.85 8 16 5.9 1.5e+04 -1.9 0.0 24 43 482 501 479 510 0.81 9 16 0.034 85 5.3 0.0 20 45 506 531 498 537 0.88 10 16 6.3 1.6e+04 -2.0 0.0 22 43 536 557 532 561 0.82 11 16 0.00077 2 10.6 0.0 17 47 559 589 553 596 0.86 12 16 0.035 90 5.2 0.0 20 45 618 643 611 647 0.87 13 16 1.5 3.9e+03 -0.0 0.0 22 52 648 678 639 680 0.77 14 16 0.57 1.4e+03 1.4 0.0 19 44 673 698 667 702 0.82 15 16 0.62 1.6e+03 1.2 0.0 19 44 729 754 724 763 0.82 16 16 1.3 3.3e+03 0.2 0.0 22 48 760 786 755 788 0.86
Sequence Information
- Coding Sequence
- ATGGAACCGTCAACATCAACTGCTATTGATTCTGGGATCAACTCTGGGACTAATTCAGGgaatCCTAATACGACGATTCTATTTACTGGATCCATAAAAGAAAAAACAgaagaaaataaagaaagttTAGTAAGgaatCCTAATACGACGATTCTATTTACTGGATCCATAAAAGAAGAAACagaagaaaataaagaaattttaGTAAGgaatCCTAATACGACGATTCTATTTACTGGATCCATAAAAGAAGAAACAgaagaaaataaagaaagttTAGTAAGgaatCCTAATACGACGATTCTATTTACTGGATCCATAAAAGAAAAAACAgaagaaaataaagaaagttTAGTAAGgaatCCTAATACGACGATTCTATTTACTGGATCCATAAAAGAAGAAACAgaagaaaataaagaaagttTAGTAAGgaatCCTAATACGACGATTCTATTTACTGGATCCATAAAAGAAGAAACAgaagaaaataaagaaagttTAGTAAGggaTCCTAATACGACGATTCTACTTACTAGAAATATAAACCAAGAAGAAGACCAAAATGGAGATAGTTTAGAAAGaactGTTAGTGAAGAAAGGCCATTTAAATATGATAGCtgtgataaaatgtttaaacgtaCCTCAACTATATCAAGACATAAAGTTCAACACAGTGAAAAAAAGCCATATGTATGTGTTACAAGTGataaatcatttaaacattcaaacaatttaaaaaaacattccaCGAGACATACCGAAGAAAGGCCATACAAATGTGATGTATGTGATAAAACATTTAGACAAGCTTCAGCTTTCTCAAATTATAAATCTCTACATAGCGATGAAAAGCCATGTGTATGTGGTACatgtaataaatcatttaaactttcaacaaaattaaatatacatgcGAAGATGCATACGAAAGAAAGGCAGTACAAATGTGATGTATGTGATAAAACATTTAGACAAGCTTCAGCTTTCTCAAGTCATAAATCTCTACATAGCGATGAAAATCCATATGTATGTGGTATATGCGataaatcatttaaacattcaaaaaatTTACAAGTACATGCCACGTTACATACCGGAATAAGGCCATACAAATGTGATGTATGTGATAAAACATTTAGAAAACGTTCAAATTTCTTAAATCATGAATCTGTACATAGCGATGAAAAGCCATATGTATGTGGTGtatgtaataaatcatttaaactttcaagacaattaaaaatacatgctAAGATGCATTCCGAAGAAAGGacatacaaatgtaatgcatgtgataaaacatttaaacaagCTTCAGCTTTATCAAATCATAAATCTGAACATAGCGATGAAAAGCCATATGTATGTGGTATATGCGataaatcatttaaacattcaaaaaatTTACAAGAACATGCTACGTTACATACCGGAATAAGGCCATACAAATGTGATGTATGTGATAAAACATTTAGAAAACGTTCAAATTTCTTAAATCATGAATCTGTACATAGCGATGAAAAGCCATATGTATGTGGTGtatgtaataaatcatttaaactttcaagacaattaaaaatacatgctAAGATGCATTCCGAAGAAAGGacatacaaatgtaatgcatgTGATAAAACATTTAGACAAGCTTCAGCTTTATCAAATCATAAATCTGAACATAGCGATGAAAAGCCATATGTATGTGGTATATGCGataaatcatttaaacattcaaaaaatTTACAAGAACATGCCACGTTACATACCGGAATACGGCCATACAAATGTGATGTATGTGATAAAACATTTAGAAAACGTTCAAAGTTCTTAAATCATGAATCTGTACATAGCGATGAAAAGCCATATGTATGTGGTGtatgtaataaatcatttaaactttcaagacaattaaaaatacatgctAAGATGCATTCCGAAGAAAGGacatacaaatgtaatgcatgTGATAAAACATTTAGACAAGCTTCAGCTTTATCAAATCATAAATCTGTACATAGCGATGAAAAGCCATATGTATGTGGTGtatgtaataaatcatttaaactttcaacaaaattaaatatgcaTGCAAAGATGCATACGGAAGAAAGGATACACAAATGTCATGTATGTGATAAAACATTTGGAAAAGCTTCAAATTTATCAATTCATAAATCTGTACATAGCGATGAAAAGCCATATGCATGTGGTGtatgtaataaatcatttaaactttcaacaaaattaaatatacatgcTAAGATGCATTCCGAAGAAAGGACACACAAATGTAATGCATGTGATAAAACGTTTAAATTTTCCTCAGGTTTATCAAGACATAAGAAAgaaagacataatattgtatctgTGCTCAAACGTATTCCGAAATAA
- Protein Sequence
- MEPSTSTAIDSGINSGTNSGNPNTTILFTGSIKEKTEENKESLVRNPNTTILFTGSIKEETEENKEILVRNPNTTILFTGSIKEETEENKESLVRNPNTTILFTGSIKEKTEENKESLVRNPNTTILFTGSIKEETEENKESLVRNPNTTILFTGSIKEETEENKESLVRDPNTTILLTRNINQEEDQNGDSLERTVSEERPFKYDSCDKMFKRTSTISRHKVQHSEKKPYVCVTSDKSFKHSNNLKKHSTRHTEERPYKCDVCDKTFRQASAFSNYKSLHSDEKPCVCGTCNKSFKLSTKLNIHAKMHTKERQYKCDVCDKTFRQASAFSSHKSLHSDENPYVCGICDKSFKHSKNLQVHATLHTGIRPYKCDVCDKTFRKRSNFLNHESVHSDEKPYVCGVCNKSFKLSRQLKIHAKMHSEERTYKCNACDKTFKQASALSNHKSEHSDEKPYVCGICDKSFKHSKNLQEHATLHTGIRPYKCDVCDKTFRKRSNFLNHESVHSDEKPYVCGVCNKSFKLSRQLKIHAKMHSEERTYKCNACDKTFRQASALSNHKSEHSDEKPYVCGICDKSFKHSKNLQEHATLHTGIRPYKCDVCDKTFRKRSKFLNHESVHSDEKPYVCGVCNKSFKLSRQLKIHAKMHSEERTYKCNACDKTFRQASALSNHKSVHSDEKPYVCGVCNKSFKLSTKLNMHAKMHTEERIHKCHVCDKTFGKASNLSIHKSVHSDEKPYACGVCNKSFKLSTKLNIHAKMHSEERTHKCNACDKTFKFSSGLSRHKKERHNIVSVLKRIPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00942023;
- 90% Identity
- iTF_00942023;
- 80% Identity
- iTF_00942023;