Meup016022.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Macrosiphum euphorbiae
Gene Symbol
-
Assembly
GCA_949089665.1
Location
CARXXK010000002.1:10856392-10874454[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.26 33 7.1 0.6 6 23 208 225 206 225 0.91
2 21 0.34 44 6.7 3.4 7 23 237 253 237 253 0.94
3 21 0.0012 0.16 14.4 0.5 1 16 259 274 259 276 0.91
4 21 0.0018 0.24 13.8 2.6 2 23 288 309 287 309 0.96
5 21 1.7e-05 0.0022 20.2 1.2 1 23 315 337 315 337 0.96
6 21 3e-06 0.0004 22.6 1.2 1 23 343 365 343 365 0.95
7 21 5.6e-06 0.00073 21.7 1.9 1 23 371 393 371 393 0.97
8 21 2.4e-05 0.0031 19.8 0.7 1 23 399 421 399 421 0.98
9 21 2.7e-05 0.0035 19.6 0.9 1 23 427 449 427 449 0.96
10 21 4.5e-06 0.00059 22.0 1.3 1 23 455 477 455 477 0.95
11 21 5.6e-06 0.00073 21.7 1.9 1 23 483 505 483 505 0.97
12 21 2.4e-05 0.0031 19.8 0.7 1 23 511 533 511 533 0.98
13 21 2.6e-05 0.0034 19.6 0.8 1 23 539 561 539 561 0.96
14 21 4.5e-06 0.00059 22.0 1.3 1 23 567 589 567 589 0.95
15 21 4e-05 0.0052 19.1 2.3 1 23 595 617 595 617 0.97
16 21 2.4e-05 0.0031 19.8 0.7 1 23 623 645 623 645 0.98
17 21 1.1e-05 0.0015 20.8 0.7 1 23 651 673 651 673 0.98
18 21 0.00012 0.015 17.6 0.8 1 23 679 701 679 701 0.98
19 21 5.9e-05 0.0077 18.5 3.3 1 23 707 729 707 729 0.97
20 21 0.00016 0.021 17.1 0.5 1 23 735 757 735 757 0.97
21 21 0.00075 0.097 15.1 4.3 1 23 763 786 763 786 0.95

Sequence Information

Coding Sequence
ATGGAACCGTCAACATCAACTGCTATTGATTCTGGGATCAACTCTGGGACTAATTCAGGgaatCCTAATACGACGATTCTATTTACTGGATCCATAAAAGAAAAAACAgaagaaaataaagaaagttTAGTAAGgaatCCTAATACGACGATTCTATTTACTGGATCCATAAAAGAAGAAACagaagaaaataaagaaattttaGTAAGgaatCCTAATACGACGATTCTATTTACTGGATCCATAAAAGAAGAAACAgaagaaaataaagaaagttTAGTAAGgaatCCTAATACGACGATTCTATTTACTGGATCCATAAAAGAAAAAACAgaagaaaataaagaaagttTAGTAAGgaatCCTAATACGACGATTCTATTTACTGGATCCATAAAAGAAGAAACAgaagaaaataaagaaagttTAGTAAGgaatCCTAATACGACGATTCTATTTACTGGATCCATAAAAGAAGAAACAgaagaaaataaagaaagttTAGTAAGggaTCCTAATACGACGATTCTACTTACTAGAAATATAAACCAAGAAGAAGACCAAAATGGAGATAGTTTAGAAAGaactGTTAGTGAAGAAAGGCCATTTAAATATGATAGCtgtgataaaatgtttaaacgtaCCTCAACTATATCAAGACATAAAGTTCAACACAGTGAAAAAAAGCCATATGTATGTGTTACAAGTGataaatcatttaaacattcaaacaatttaaaaaaacattccaCGAGACATACCGAAGAAAGGCCATACAAATGTGATGTATGTGATAAAACATTTAGACAAGCTTCAGCTTTCTCAAATTATAAATCTCTACATAGCGATGAAAAGCCATGTGTATGTGGTACatgtaataaatcatttaaactttcaacaaaattaaatatacatgcGAAGATGCATACGAAAGAAAGGCAGTACAAATGTGATGTATGTGATAAAACATTTAGACAAGCTTCAGCTTTCTCAAGTCATAAATCTCTACATAGCGATGAAAATCCATATGTATGTGGTATATGCGataaatcatttaaacattcaaaaaatTTACAAGTACATGCCACGTTACATACCGGAATAAGGCCATACAAATGTGATGTATGTGATAAAACATTTAGAAAACGTTCAAATTTCTTAAATCATGAATCTGTACATAGCGATGAAAAGCCATATGTATGTGGTGtatgtaataaatcatttaaactttcaagacaattaaaaatacatgctAAGATGCATTCCGAAGAAAGGacatacaaatgtaatgcatgtgataaaacatttaaacaagCTTCAGCTTTATCAAATCATAAATCTGAACATAGCGATGAAAAGCCATATGTATGTGGTATATGCGataaatcatttaaacattcaaaaaatTTACAAGAACATGCTACGTTACATACCGGAATAAGGCCATACAAATGTGATGTATGTGATAAAACATTTAGAAAACGTTCAAATTTCTTAAATCATGAATCTGTACATAGCGATGAAAAGCCATATGTATGTGGTGtatgtaataaatcatttaaactttcaagacaattaaaaatacatgctAAGATGCATTCCGAAGAAAGGacatacaaatgtaatgcatgTGATAAAACATTTAGACAAGCTTCAGCTTTATCAAATCATAAATCTGAACATAGCGATGAAAAGCCATATGTATGTGGTATATGCGataaatcatttaaacattcaaaaaatTTACAAGAACATGCCACGTTACATACCGGAATACGGCCATACAAATGTGATGTATGTGATAAAACATTTAGAAAACGTTCAAAGTTCTTAAATCATGAATCTGTACATAGCGATGAAAAGCCATATGTATGTGGTGtatgtaataaatcatttaaactttcaagacaattaaaaatacatgctAAGATGCATTCCGAAGAAAGGacatacaaatgtaatgcatgTGATAAAACATTTAGACAAGCTTCAGCTTTATCAAATCATAAATCTGTACATAGCGATGAAAAGCCATATGTATGTGGTGtatgtaataaatcatttaaactttcaacaaaattaaatatgcaTGCAAAGATGCATACGGAAGAAAGGATACACAAATGTCATGTATGTGATAAAACATTTGGAAAAGCTTCAAATTTATCAATTCATAAATCTGTACATAGCGATGAAAAGCCATATGCATGTGGTGtatgtaataaatcatttaaactttcaacaaaattaaatatacatgcTAAGATGCATTCCGAAGAAAGGACACACAAATGTAATGCATGTGATAAAACGTTTAAATTTTCCTCAGGTTTATCAAGACATAAGAAAgaaagacataatattgtatctgTGCTCAAACGTATTCCGAAATAA
Protein Sequence
MEPSTSTAIDSGINSGTNSGNPNTTILFTGSIKEKTEENKESLVRNPNTTILFTGSIKEETEENKEILVRNPNTTILFTGSIKEETEENKESLVRNPNTTILFTGSIKEKTEENKESLVRNPNTTILFTGSIKEETEENKESLVRNPNTTILFTGSIKEETEENKESLVRDPNTTILLTRNINQEEDQNGDSLERTVSEERPFKYDSCDKMFKRTSTISRHKVQHSEKKPYVCVTSDKSFKHSNNLKKHSTRHTEERPYKCDVCDKTFRQASAFSNYKSLHSDEKPCVCGTCNKSFKLSTKLNIHAKMHTKERQYKCDVCDKTFRQASAFSSHKSLHSDENPYVCGICDKSFKHSKNLQVHATLHTGIRPYKCDVCDKTFRKRSNFLNHESVHSDEKPYVCGVCNKSFKLSRQLKIHAKMHSEERTYKCNACDKTFKQASALSNHKSEHSDEKPYVCGICDKSFKHSKNLQEHATLHTGIRPYKCDVCDKTFRKRSNFLNHESVHSDEKPYVCGVCNKSFKLSRQLKIHAKMHSEERTYKCNACDKTFRQASALSNHKSEHSDEKPYVCGICDKSFKHSKNLQEHATLHTGIRPYKCDVCDKTFRKRSKFLNHESVHSDEKPYVCGVCNKSFKLSRQLKIHAKMHSEERTYKCNACDKTFRQASALSNHKSVHSDEKPYVCGVCNKSFKLSTKLNMHAKMHTEERIHKCHVCDKTFGKASNLSIHKSVHSDEKPYACGVCNKSFKLSTKLNIHAKMHSEERTHKCNACDKTFKFSSGLSRHKKERHNIVSVLKRIPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00942453;
90% Identity
iTF_00942453;
80% Identity
iTF_00942453;