Meup016023.1
Basic Information
- Insect
- Macrosiphum euphorbiae
- Gene Symbol
- -
- Assembly
- GCA_949089665.1
- Location
- CARXXK010000002.1:10872982-10874454[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.5 8.8e+03 -1.1 0.0 25 45 8 28 4 31 0.79 2 14 0.0015 3.7 9.6 0.0 19 47 30 58 22 64 0.85 3 14 4.2 1.1e+04 -1.4 0.0 23 43 62 82 58 87 0.83 4 14 0.019 49 6.1 0.0 20 45 87 112 82 120 0.87 5 14 0.00035 0.88 11.7 0.0 16 47 139 170 126 176 0.85 6 14 2.1 5.4e+03 -0.5 0.0 23 47 174 198 170 205 0.79 7 14 0.02 50 6.0 0.0 20 45 199 224 193 229 0.87 8 14 3.5 8.8e+03 -1.2 0.0 22 43 229 250 223 252 0.81 9 14 0.00044 1.1 11.3 0.0 17 47 252 282 246 288 0.86 10 14 0.017 43 6.3 0.0 20 45 311 336 295 344 0.88 11 14 1.1 2.8e+03 0.5 0.0 22 52 341 371 336 373 0.78 12 14 0.29 7.4e+02 2.3 0.0 18 45 365 392 359 397 0.83 13 14 0.38 9.6e+02 1.9 0.0 19 44 422 447 417 452 0.81 14 14 0.62 1.6e+03 1.2 0.1 22 48 453 479 446 482 0.85
Sequence Information
- Coding Sequence
- ATGCATACGAAAGAAAGGCAGTACAAATGTGATGTATGTGATAAAACATTTAGACAAGCTTCAGCTTTCTCAAGTCATAAATCTCTACATAGCGATGAAAATCCATATGTATGTGGTATATGCGataaatcatttaaacattcaaaaaatTTACAAGTACATGCCACGTTACATACCGGAATAAGGCCATACAAATGTGATGTATGTGATAAAACATTTAGAAAACGTTCAAATTTCTTAAATCATGAATCTGTACATAGCGATGAAAAGCCATATGTATGTGGTGtatgtaataaatcatttaaactttcaagacaattaaaaatacatgctAAGATGCATTCCGAAGAAAGGacatacaaatgtaatgcatgtgataaaacatttaaacaagCTTCAGCTTTATCAAATCATAAATCTGAACATAGCGATGAAAAGCCATATGTATGTGGTATATGCGataaatcatttaaacattcaaaaaatTTACAAGAACATGCTACGTTACATACCGGAATAAGGCCATACAAATGTGATGTATGTGATAAAACATTTAGAAAACGTTCAAATTTCTTAAATCATGAATCTGTACATAGCGATGAAAAGCCATATGTATGTGGTGtatgtaataaatcatttaaactttcaagacaattaaaaatacatgctAAGATGCATTCCGAAGAAAGGacatacaaatgtaatgcatgTGATAAAACATTTAGACAAGCTTCAGCTTTATCAAATCATAAATCTGAACATAGCGATGAAAAGCCATATGTATGTGGTATATGCGataaatcatttaaacattcaaaaaatTTACAAGAACATGCCACGTTACATACCGGAATACGGCCATACAAATGTGATGTATGTGATAAAACATTTAGAAAACGTTCAAAGTTCTTAAATCATGAATCTGTACATAGCGATGAAAAGCCATATGTATGTGGTGtatgtaataaatcatttaaactttcaagacaattaaaaatacatgctAAGATGCATTCCGAAGAAAGGacatacaaatgtaatgcatgTGATAAAACATTTAGACAAGCTTCAGCTTTATCAAATCATAAATCTGTACATAGCGATGAAAAGCCATATGTATGTGGTGtatgtaataaatcatttaaactttcaacaaaattaaatatgcaTGCAAAGATGCATACGGAAGAAAGGATACACAAATGTCATGTATGTGATAAAACATTTGGAAAAGCTTCAAATTTATCAATTCATAAATCTGTACATAGCGATGAAAAGCCATATGCATGTGGTGtatgtaataaatcatttaaactttcaacaaaattaaatatacatgcTAAGATGCATTCCGAAGAAAGGACACACAAATGTAATGCATGTGATAAAACGTTTAAATTTTCCTCAGGTTTATCAAGACATAAGAAAgaaagacataatattgtatctgTGCTCAAACGTATTCCGAAATAA
- Protein Sequence
- MHTKERQYKCDVCDKTFRQASAFSSHKSLHSDENPYVCGICDKSFKHSKNLQVHATLHTGIRPYKCDVCDKTFRKRSNFLNHESVHSDEKPYVCGVCNKSFKLSRQLKIHAKMHSEERTYKCNACDKTFKQASALSNHKSEHSDEKPYVCGICDKSFKHSKNLQEHATLHTGIRPYKCDVCDKTFRKRSNFLNHESVHSDEKPYVCGVCNKSFKLSRQLKIHAKMHSEERTYKCNACDKTFRQASALSNHKSEHSDEKPYVCGICDKSFKHSKNLQEHATLHTGIRPYKCDVCDKTFRKRSKFLNHESVHSDEKPYVCGVCNKSFKLSRQLKIHAKMHSEERTYKCNACDKTFRQASALSNHKSVHSDEKPYVCGVCNKSFKLSTKLNMHAKMHTEERIHKCHVCDKTFGKASNLSIHKSVHSDEKPYACGVCNKSFKLSTKLNIHAKMHSEERTHKCNACDKTFKFSSGLSRHKKERHNIVSVLKRIPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00942027;
- 90% Identity
- iTF_00942027;
- 80% Identity
- iTF_00942027;