Basic Information

Insect: Macrosiphum euphorbiae
Gene Symbol: -
Assembly: GCA_949089665.1
Location: CARXXK010000002.1:10872982-10874454[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 9.5e-06 0.0012 21.0 1.2 1 23 8 30 8 30 0.96

2 17 1.7e-06 0.00023 23.3 1.2 1 23 36 58 36 58 0.95

3 17 3.1e-06 0.00041 22.5 1.9 1 23 64 86 64 86 0.97

4 17 1.3e-05 0.0018 20.5 0.7 1 23 92 114 92 114 0.98

5 17 1.5e-05 0.002 20.4 0.9 1 23 120 142 120 142 0.96

6 17 2.6e-06 0.00033 22.8 1.3 1 23 148 170 148 170 0.95

7 17 3.1e-06 0.00041 22.5 1.9 1 23 176 198 176 198 0.97

8 17 1.3e-05 0.0018 20.5 0.7 1 23 204 226 204 226 0.98

9 17 1.5e-05 0.0019 20.4 0.8 1 23 232 254 232 254 0.96

10 17 2.6e-06 0.00033 22.8 1.3 1 23 260 282 260 282 0.95

11 17 2.3e-05 0.0029 19.8 2.3 1 23 288 310 288 310 0.97

12 17 1.3e-05 0.0018 20.5 0.7 1 23 316 338 316 338 0.98

13 17 6.5e-06 0.00085 21.5 0.7 1 23 344 366 344 366 0.98

14 17 6.5e-05 0.0085 18.4 0.8 1 23 372 394 372 394 0.98

15 17 3.3e-05 0.0044 19.3 3.3 1 23 400 422 400 422 0.97

16 17 9.3e-05 0.012 17.9 0.5 1 23 428 450 428 450 0.97

17 17 0.00042 0.055 15.8 4.3 1 23 456 479 456 479 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	9.5e-06	0.0012	21.0	1.2	1	23	8	30	8	30	0.96
2	17	1.7e-06	0.00023	23.3	1.2	1	23	36	58	36	58	0.95
3	17	3.1e-06	0.00041	22.5	1.9	1	23	64	86	64	86	0.97
4	17	1.3e-05	0.0018	20.5	0.7	1	23	92	114	92	114	0.98
5	17	1.5e-05	0.002	20.4	0.9	1	23	120	142	120	142	0.96
6	17	2.6e-06	0.00033	22.8	1.3	1	23	148	170	148	170	0.95
7	17	3.1e-06	0.00041	22.5	1.9	1	23	176	198	176	198	0.97
8	17	1.3e-05	0.0018	20.5	0.7	1	23	204	226	204	226	0.98
9	17	1.5e-05	0.0019	20.4	0.8	1	23	232	254	232	254	0.96
10	17	2.6e-06	0.00033	22.8	1.3	1	23	260	282	260	282	0.95
11	17	2.3e-05	0.0029	19.8	2.3	1	23	288	310	288	310	0.97
12	17	1.3e-05	0.0018	20.5	0.7	1	23	316	338	316	338	0.98
13	17	6.5e-06	0.00085	21.5	0.7	1	23	344	366	344	366	0.98
14	17	6.5e-05	0.0085	18.4	0.8	1	23	372	394	372	394	0.98
15	17	3.3e-05	0.0044	19.3	3.3	1	23	400	422	400	422	0.97
16	17	9.3e-05	0.012	17.9	0.5	1	23	428	450	428	450	0.97
17	17	0.00042	0.055	15.8	4.3	1	23	456	479	456	479	0.95

Sequence Information

Coding Sequence: ATGCATACGAAAGAAAGGCAGTACAAATGTGATGTATGTGATAAAACATTTAGACAAGCTTCAGCTTTCTCAAGTCATAAATCTCTACATAGCGATGAAAATCCATATGTATGTGGTATATGCGataaatcatttaaacattcaaaaaatTTACAAGTACATGCCACGTTACATACCGGAATAAGGCCATACAAATGTGATGTATGTGATAAAACATTTAGAAAACGTTCAAATTTCTTAAATCATGAATCTGTACATAGCGATGAAAAGCCATATGTATGTGGTGtatgtaataaatcatttaaactttcaagacaattaaaaatacatgctAAGATGCATTCCGAAGAAAGGacatacaaatgtaatgcatgtgataaaacatttaaacaagCTTCAGCTTTATCAAATCATAAATCTGAACATAGCGATGAAAAGCCATATGTATGTGGTATATGCGataaatcatttaaacattcaaaaaatTTACAAGAACATGCTACGTTACATACCGGAATAAGGCCATACAAATGTGATGTATGTGATAAAACATTTAGAAAACGTTCAAATTTCTTAAATCATGAATCTGTACATAGCGATGAAAAGCCATATGTATGTGGTGtatgtaataaatcatttaaactttcaagacaattaaaaatacatgctAAGATGCATTCCGAAGAAAGGacatacaaatgtaatgcatgTGATAAAACATTTAGACAAGCTTCAGCTTTATCAAATCATAAATCTGAACATAGCGATGAAAAGCCATATGTATGTGGTATATGCGataaatcatttaaacattcaaaaaatTTACAAGAACATGCCACGTTACATACCGGAATACGGCCATACAAATGTGATGTATGTGATAAAACATTTAGAAAACGTTCAAAGTTCTTAAATCATGAATCTGTACATAGCGATGAAAAGCCATATGTATGTGGTGtatgtaataaatcatttaaactttcaagacaattaaaaatacatgctAAGATGCATTCCGAAGAAAGGacatacaaatgtaatgcatgTGATAAAACATTTAGACAAGCTTCAGCTTTATCAAATCATAAATCTGTACATAGCGATGAAAAGCCATATGTATGTGGTGtatgtaataaatcatttaaactttcaacaaaattaaatatgcaTGCAAAGATGCATACGGAAGAAAGGATACACAAATGTCATGTATGTGATAAAACATTTGGAAAAGCTTCAAATTTATCAATTCATAAATCTGTACATAGCGATGAAAAGCCATATGCATGTGGTGtatgtaataaatcatttaaactttcaacaaaattaaatatacatgcTAAGATGCATTCCGAAGAAAGGACACACAAATGTAATGCATGTGATAAAACGTTTAAATTTTCCTCAGGTTTATCAAGACATAAGAAAgaaagacataatattgtatctgTGCTCAAACGTATTCCGAAATAA
Protein Sequence: MHTKERQYKCDVCDKTFRQASAFSSHKSLHSDENPYVCGICDKSFKHSKNLQVHATLHTGIRPYKCDVCDKTFRKRSNFLNHESVHSDEKPYVCGVCNKSFKLSRQLKIHAKMHSEERTYKCNACDKTFKQASALSNHKSEHSDEKPYVCGICDKSFKHSKNLQEHATLHTGIRPYKCDVCDKTFRKRSNFLNHESVHSDEKPYVCGVCNKSFKLSRQLKIHAKMHSEERTYKCNACDKTFRQASALSNHKSEHSDEKPYVCGICDKSFKHSKNLQEHATLHTGIRPYKCDVCDKTFRKRSKFLNHESVHSDEKPYVCGVCNKSFKLSRQLKIHAKMHSEERTYKCNACDKTFRQASALSNHKSVHSDEKPYVCGVCNKSFKLSTKLNMHAKMHTEERIHKCHVCDKTFGKASNLSIHKSVHSDEKPYACGVCNKSFKLSTKLNIHAKMHSEERTHKCNACDKTFKFSSGLSRHKKERHNIVSVLKRIPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00942452;
90% Identity: iTF_00942452;
80% Identity: iTF_00942452;