Meup002935.2
Basic Information
- Insect
- Macrosiphum euphorbiae
- Gene Symbol
- -
- Assembly
- GCA_949089665.1
- Location
- CARXXK010000001.1:37686880-37691183[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0012 3 9.9 0.0 26 46 226 246 211 254 0.83 2 15 1.8 4.5e+03 -0.2 0.0 21 32 249 260 244 282 0.72 3 15 1 2.6e+03 0.5 0.0 17 31 272 287 263 301 0.74 4 15 0.023 58 5.8 0.0 21 46 305 330 292 338 0.80 5 15 0.018 46 6.1 0.0 20 43 332 355 326 360 0.85 6 15 0.00074 1.9 10.6 0.0 21 43 361 383 356 387 0.88 7 15 0.0011 2.7 10.1 0.0 21 45 389 413 384 422 0.81 8 15 2 5.1e+03 -0.4 0.1 21 31 417 427 409 441 0.77 9 15 1.7e-05 0.044 15.8 0.0 21 46 445 470 436 478 0.80 10 15 2.2 5.5e+03 -0.5 0.1 21 31 473 483 468 499 0.75 11 15 0.0021 5.4 9.1 0.0 21 45 501 525 488 534 0.79 12 15 0.2 5e+02 2.9 0.0 21 45 529 553 521 562 0.77 13 15 0.23 5.9e+02 2.6 0.0 21 43 557 579 548 583 0.81 14 15 0.013 32 6.6 0.0 21 46 585 610 576 618 0.79 15 15 0.71 1.8e+03 1.1 0.0 21 43 613 635 608 644 0.75
Sequence Information
- Coding Sequence
- ATGGAACCATTAAGAGCATCCAAAGTAAATTCCAAgtattataataaattgcacAGTTCTAGAGCCCTGACTATTCCAATTATTAGATGTGAAGTATTCAATAGAGTTATTAAAGAAGAGTTTATTGATAATACAGACCATACGAATGAGAATCATTTATTACAAACGGGacctAAATGTGAATTTGAAGAGGAAATAAACCCCAGTGATcccaaaataaaaatcgaaaaggaTTTGAACGATGGTAATGTGTTCCAAGGATCAGTTAAAAATGAGTGCCACTCTACGGAATTAAGTATTCATATGAATTCGGACAATACATCAAACCCCAGTGAtcccaaaataaaaattgaaaaggaTTTGAACGATGGTAATGAGTTCCAAGGATCAGTTAAAAATGAGTGCCACTCTACGGAATTAAGTATTCATATGAATTCGGACAATACATCAAACTtaaCATACTTCACAAAACATTCTAAGATTCAAactagcaaaataaaaaaaaggtttgtttGTGACAATTGTAAAAAGTCATATTCCACTAAATCAGATCTGATTACACACATATTGTGTTGTACGGGAGCAAAGCTCTATAAAACTGATATTTGTGATAAAGGGGTTTCTCAAGCAggtttaaaaaagaataaaagaaCACATACTGGATTAAAGTCATATAAATGTGATATCTGTGCTAAAGTGTTTACTCAatcagaaaacttaaaaaagcataaaagaACACATTCTGGTGAGAAACCATTCGTATGTGATATCTGTGATAAAGGGTTTACTGCAGCTGCAactttaaaaattcataaaagaaCACATTCTGGTGAGAAACCATACGTATGTGATATCTGTGATAAAGGGTTTACTGCAGCTGCaagtttaaaaattcataaaagaaCACATTCTGGTGAGAAACCATTGGTATGTGATATCTGTAATAAAGGGTTTACTGCagctacaaatttaaaaaagcataaaagaACACATTCTGGTGAGAAACCATTCGTATGTGATATCTGTGATAAAGGATTTACTCAattagaaaacttaaaaaagcataaaagaACACATTCTGGTGAGAAACCATTCGTATGTGATATCTGTGAAAAAGTGTTTACTCAATCAGAACacttaaaaaagcataaaagaACACATTCTGGTGAGAAACCATACGTATGTGATATCTGTGCTAAAGTGTTTACTCGAtcagaaaacttaaaaattcataaaagaaCACATTCTGGTGAGAAACCATTCGTATGTGATATCTGTGATAAAGGGTTTACTGCAgctgcatatttaaaaattcataaaagaaCACATTCTGGTGAGAAACCATACGTATGTGATATCTGTGCTAAAGTGTTTACTCAatcagaaaacttaaaaaagcataaaagaACACATTCTGGTGAGAAACCATTCGTATGTGATATCTGTGATAAAGGGTTTACTGCAGCTGCAactttaaaaattcataaaagaaTACATTCTGGTGAGAAACCATACGTATGTGATATCTGTGAAAAAGTGTTTACTCAATcagaatacttaaaaattcataaaagaaCACATTCTGGTGAGAAACCATACGTATGTGATATCTGTGATAAAGGGTTTACTGGAgctgcaaatttaaaaatgcataaaagaACACATTCTGGTGAGAAACCATACGTATGTGATATCTGTGATAAAGGGTTTACTGCAgctgcaaatttaaaaatgcataaaagaACACATTCTGGTGAGAAACCATACGTATGTGATATCTGTGATAAAGGGTTTACTCAATCAGAAcacttaaaaaatcataaaagaaCACATTCTGGTGAGAAACCATACGTATGTGATATCTGTGATAAAGCGTTTACTCATGGTGGAGgtttaaaaaagcataaaaggACACATACTGGAACCAAGCCGTGA
- Protein Sequence
- MEPLRASKVNSKYYNKLHSSRALTIPIIRCEVFNRVIKEEFIDNTDHTNENHLLQTGPKCEFEEEINPSDPKIKIEKDLNDGNVFQGSVKNECHSTELSIHMNSDNTSNPSDPKIKIEKDLNDGNEFQGSVKNECHSTELSIHMNSDNTSNLTYFTKHSKIQTSKIKKRFVCDNCKKSYSTKSDLITHILCCTGAKLYKTDICDKGVSQAGLKKNKRTHTGLKSYKCDICAKVFTQSENLKKHKRTHSGEKPFVCDICDKGFTAAATLKIHKRTHSGEKPYVCDICDKGFTAAASLKIHKRTHSGEKPLVCDICNKGFTAATNLKKHKRTHSGEKPFVCDICDKGFTQLENLKKHKRTHSGEKPFVCDICEKVFTQSEHLKKHKRTHSGEKPYVCDICAKVFTRSENLKIHKRTHSGEKPFVCDICDKGFTAAAYLKIHKRTHSGEKPYVCDICAKVFTQSENLKKHKRTHSGEKPFVCDICDKGFTAAATLKIHKRIHSGEKPYVCDICEKVFTQSEYLKIHKRTHSGEKPYVCDICDKGFTGAANLKMHKRTHSGEKPYVCDICDKGFTAAANLKMHKRTHSGEKPYVCDICDKGFTQSEHLKNHKRTHSGEKPYVCDICDKAFTHGGGLKKHKRTHTGTKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00942012;
- 90% Identity
- iTF_00942012;
- 80% Identity
- iTF_00942012;